RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 TTC13Q8NBP0 860 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 KCNK13Q9HB14 408 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 HMGXB4Q9UGU5 601 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 USP18Q9UMW8 372 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 MAGED2Q9UNF1 606 aaPredicted RBP12.91□□□□□ -0.34
CHMP3-201ENST00000263856 ERBB2P04626 1255 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 NAMPTP43490 491 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 CCNG1P51959 295 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 CACNA2D1P54289 1103 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 SLC25A11Q02978 314 aaKnown RBP12.91□□□□□ -0.34
CHMP3-201ENST00000263856 C16orf46Q6P387 395 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 ABHD15Q6UXT9 468 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 IZUMO2Q6UXV1 221 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 RBM15BQ8NDT2 890 aaKnown RBP12.91□□□□□ -0.34
CHMP3-201ENST00000263856 PHC3Q8NDX5 983 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 SHKBP1Q8TBC3 707 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 USP6NLQ92738 828 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 E2F7Q96AV8 911 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 PTCD3Q96EY7 689 aaKnown RBP12.91□□□□□ -0.34
CHMP3-201ENST00000263856 PORCNQ9H237 461 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 SLC17A6Q9P2U8 582 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 LNPEPQ9UIQ6 1025 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 TXNDC9O14530 226 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 DLDP09622 509 aaKnown RBP12.91□□□□□ -0.34
CHMP3-201ENST00000263856 CHRM1P11229 460 aaPredicted RBP12.91□□□□□ -0.34
CHMP3-201ENST00000263856 BBS12Q6ZW61 710 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 RSPH3Q86UC2 560 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 NDUFAF2Q8N183 169 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 ALKBH8Q96BT7 664 aaKnown RBP12.91□□□□□ -0.34
CHMP3-201ENST00000263856 GBP5Q96PP8 586 aa12.91□□□□□ -0.34
CHMP3-201ENST00000263856 E7ENQ6 273 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 ITGBL1O95965 494 aaPredicted RBP12.9□□□□□ -0.34
CHMP3-201ENST00000263856 ZBED1O96006 694 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 TNNC2P02585 160 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 PRKD1Q15139 912 aaPredicted RBP12.9□□□□□ -0.34
CHMP3-201ENST00000263856 NIM1KQ8IY84 436 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 ARHGAP24Q8N264 748 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 AGR3Q8TD06 166 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 TRAPPC12Q8WVT3 735 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 HEXIM2Q96MH2 286 aaKnown RBP12.9□□□□□ -0.34
CHMP3-201ENST00000263856 MMP19Q99542 508 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 EBF4Q9BQW3 602 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 TRIM4Q9C037 500 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 LRCH1Q9Y2L9 728 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 PRR5-ARHGAP8B1AHC4 643 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 SPECC1L-ADORA2AF8WAN1 911 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 LYPLA1O75608 230 aaPredicted RBP12.9□□□□□ -0.34
CHMP3-201ENST00000263856 KRT37O76014 449 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 RBL1P28749 1068 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 PAPOLAP51003 745 aaKnown RBP12.9□□□□□ -0.34
CHMP3-201ENST00000263856 IGBP1P78318 339 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 CRADDP78560 199 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 ARHGAP8P85298 464 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 SGSM1Q2NKQ1 1148 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 LRRC38Q5VT99 294 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 SAMD7Q7Z3H4 446 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 KBTBD2Q8IY47 623 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 ZNF276Q8N554 614 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 SKA1Q96BD8 255 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 PDLIM7Q9NR12 457 aa12.9□□□□□ -0.34
CHMP3-201ENST00000263856 C3orf70A6NLC5 250 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-201ENST00000263856 LIN7AO14910 233 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-201ENST00000263856 F7P08709 466 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-201ENST00000263856 CXCL8P10145 99 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 PEX6Q13608 980 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 ZNF667Q5HYK9 610 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 RASIP1Q5U651 963 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 RIPOR1Q6ZS17 1223 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 CRLF3Q8IUI8 442 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 BRSK2Q8IWQ3 736 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 TMEM192Q8IY95 271 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 MZB1Q8WU39 189 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 PYDC1Q8WXC3 89 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 ATXN7L3BQ96GX2 97 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 PIWIL1Q96J94 861 aaKnown RBP12.89□□□□□ -0.35
CHMP3-201ENST00000263856 PPP1R1BQ9UD71 204 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-201ENST00000263856 PACSIN3Q9UKS6 424 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 STRIP2Q9ULQ0 834 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 DCAF8L1A6NGE4 600 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 B4GALT5O43286 388 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 PDE5AO76074 875 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 PRKCBP05771 671 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 PDGFRAP16234 1089 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 GMPRP36959 345 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 SLC18A1P54219 525 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 YWHAEP62258 255 aaKnown RBP12.89□□□□□ -0.35
CHMP3-201ENST00000263856 SLC25A3Q00325 362 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 ZC3H12AQ5D1E8 599 aaKnown RBP12.89□□□□□ -0.35
CHMP3-201ENST00000263856 NBPF12Q5TAG4 269 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-201ENST00000263856 POLNQ7Z5Q5 900 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 SCUBE1Q8IWY4 988 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 RDM1Q8NG50 284 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 SLC44A1Q8WWI5 657 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 ANKRD36BP1Q96IX9 119 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 TWNKQ96RR1 684 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 SH3GL3Q99963 347 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 IL1RAPL1Q9NZN1 696 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 CPSF2Q9P2I0 782 aaKnown RBP12.89□□□□□ -0.35
CHMP3-201ENST00000263856 LOC100653049A0A140TA62 436 aa12.89□□□□□ -0.35
CHMP3-201ENST00000263856 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms