RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 ZNF143P52747 638 aaPredicted RBP23.18■■□□□ 1.3
CCDC9-201ENST00000221922 PDE4CQ08493 712 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 FBF1Q8TES7 1133 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 STAMBPL1Q96FJ0 436 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 CNPY3Q9BT09 278 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 RSAD1Q9HA92 442 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 KIF9Q9HAQ2 790 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 SSU72Q9NP77 194 aaKnown RBP23.18■■□□□ 1.3
CCDC9-201ENST00000221922 GRID1Q9ULK0 1009 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 USP18Q9UMW8 372 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 TRIP11Q15643 1979 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 CCND1P24385 295 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 RPA3P35244 121 aaPredicted RBP23.18■■□□□ 1.3
CCDC9-201ENST00000221922 PDIA2Q13087 525 aaKnown RBP23.18■■□□□ 1.3
CCDC9-201ENST00000221922 DNAJC3Q13217 504 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 ACCSLQ4AC99 568 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 EFHC2Q5JST6 749 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 HP1BP3Q5SSJ5 553 aaPredicted RBP23.18■■□□□ 1.3
CCDC9-201ENST00000221922 SLC27A1Q6PCB7 646 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 RFX6Q8HWS3 928 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 RSAD2Q8WXG1 361 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 FAM49AQ9H0Q0 323 aaPredicted RBP23.18■■□□□ 1.3
CCDC9-201ENST00000221922 RRAGCQ9HB90 399 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 TXLNGQ9NUQ3 528 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 PSMC3IPQ9P2W1 217 aaPredicted RBP23.18■■□□□ 1.3
CCDC9-201ENST00000221922 TRIM33Q9UPN9 1127 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 USH1CQ9Y6N9 552 aa23.18■■□□□ 1.3
CCDC9-201ENST00000221922 APOC4-APOC2K7ER74 178 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 SMAPO00193 183 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 NPTXRO95502 500 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 APOC2P02655 101 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 GPD1P21695 349 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 PPIL6Q8IXY8 311 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 PCSK1NQ9UHG2 260 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 EDF1O60869 148 aaKnown RBP23.17■■□□□ 1.3
CCDC9-201ENST00000221922 ATP5HO75947 161 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 GPX6P59796 221 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 ZC3H12AQ5D1E8 599 aaKnown RBP23.17■■□□□ 1.3
CCDC9-201ENST00000221922 CST9Q5W186 159 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 CATSPER4Q7RTX7 472 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 TLK2Q86UE8 772 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 UBA3Q8TBC4 463 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 SPOCK2Q92563 424 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 N4BP2L2Q92802 583 aaPredicted RBP23.17■■□□□ 1.3
CCDC9-201ENST00000221922 MYLK2Q9H1R3 596 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 TSPAN16Q9UKR8 245 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 L3MBTL1Q9Y468 752 aa23.17■■□□□ 1.3
CCDC9-201ENST00000221922 ZNF865P0CJ78 1059 aaPredicted RBP23.16■■□□□ 1.3
CCDC9-201ENST00000221922 IBSPP21815 317 aaPredicted RBP23.16■■□□□ 1.3
CCDC9-201ENST00000221922 SETDB1Q15047 1291 aa23.16■■□□□ 1.3
CCDC9-201ENST00000221922 HIF1AQ16665 826 aa23.16■■□□□ 1.3
CCDC9-201ENST00000221922 PRAMEF19Q5SWL8 479 aa23.16■■□□□ 1.3
CCDC9-201ENST00000221922 NOTUMQ6P988 496 aa23.16■■□□□ 1.3
CCDC9-201ENST00000221922 DPH6Q7L8W6 267 aa23.16■■□□□ 1.3
CCDC9-201ENST00000221922 C4orf33Q8N1A6 199 aa23.16■■□□□ 1.3
CCDC9-201ENST00000221922 HSPH1Q92598 858 aa23.16■■□□□ 1.3
CCDC9-201ENST00000221922 SNX27Q96L92 541 aa23.16■■□□□ 1.3
CCDC9-201ENST00000221922 RABGEF1Q9UJ41 708 aa23.16■■□□□ 1.3
CCDC9-201ENST00000221922 ZMYND8Q9ULU4 1186 aaPredicted RBP23.16■■□□□ 1.3
CCDC9-201ENST00000221922 CLUHO75153 1309 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 MCF2LO15068 1137 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 ANP32DO95626 131 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 DARSP14868 501 aaKnown RBP23.15■■□□□ 1.3
CCDC9-201ENST00000221922 CA4P22748 312 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 CTCFP49711 727 aaPredicted RBP23.15■■□□□ 1.3
CCDC9-201ENST00000221922 GEMIN4P57678 1058 aaKnown RBP23.15■■□□□ 1.3
CCDC9-201ENST00000221922 MFSD10Q14728 455 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 SLC1A5Q15758 541 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 OLFML2BQ68BL8 750 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 SLCO1B3Q9NPD5 702 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 FLRT1Q9NZU1 646 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 SAE1Q9UBE0 346 aaPredicted RBP23.15■■□□□ 1.3
CCDC9-201ENST00000221922 CHKBQ9Y259 395 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 C15orf41Q9Y2V0 281 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 DOCK3Q8IZD9 2030 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 A0A1W2PPM1 405 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 C2CD4BA6NLJ0 364 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 ITGBL1O95965 494 aaPredicted RBP23.15■■□□□ 1.3
CCDC9-201ENST00000221922 CYP2C9P11712 490 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 TMEM62Q0P6H9 643 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 PARP6Q2NL67 630 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 OR6B2Q6IFH4 312 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 LRRC8CQ8TDW0 803 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 RAB3IPQ96QF0 476 aaPredicted RBP23.15■■□□□ 1.3
CCDC9-201ENST00000221922 DHRS4Q9BTZ2 278 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 MAK16Q9BXY0 300 aaKnown RBP23.15■■□□□ 1.3
CCDC9-201ENST00000221922 LRMDAQ9H2I8 198 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 ETNK1Q9HBU6 452 aa23.15■■□□□ 1.3
CCDC9-201ENST00000221922 A8MUI8 341 aa23.14■■□□□ 1.29
CCDC9-201ENST00000221922 HAS3O00219 553 aa23.14■■□□□ 1.29
CCDC9-201ENST00000221922 WFS1O76024 890 aa23.14■■□□□ 1.29
CCDC9-201ENST00000221922 CD48P09326 243 aa23.14■■□□□ 1.29
CCDC9-201ENST00000221922 SETSIPP0DME0 302 aa23.14■■□□□ 1.29
CCDC9-201ENST00000221922 ARL4CP56559 192 aa23.14■■□□□ 1.29
CCDC9-201ENST00000221922 HUNKP57058 714 aa23.14■■□□□ 1.29
CCDC9-201ENST00000221922 EIF3EP60228 445 aaKnown RBP23.14■■□□□ 1.29
CCDC9-201ENST00000221922 ADAM17P78536 824 aa23.14■■□□□ 1.29
CCDC9-201ENST00000221922 ZBTB6Q15916 424 aa23.14■■□□□ 1.29
CCDC9-201ENST00000221922 CAPN12Q6ZSI9 719 aa23.14■■□□□ 1.29
CCDC9-201ENST00000221922 CPT1BQ92523 772 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms