RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeastyeast

Gene SHH4, Length 507 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHH4YLR164W VTS1Q08831 523 aaKnown RBP RIP-Chip data6.88□□□□□ -1.31not detected
SHH4YLR164W RPL11AP0C0W9 174 aaKnown RBP6.87□□□□□ -1.31
SHH4YLR164W HAP3P13434 144 aa6.87□□□□□ -1.31
SHH4YLR164W RPL11BQ3E757 174 aaPredicted RBP6.87□□□□□ -1.31
SHH4YLR164W YAR023CD6VPM8 179 aa6.86□□□□□ -1.31
SHH4YLR164W CDC43P18898 376 aa6.86□□□□□ -1.31
SHH4YLR164W CWP2P43497 92 aa6.84□□□□□ -1.31
SHH4YLR164W CWC27Q02770 301 aa6.84□□□□□ -1.31
SHH4YLR164W PPT2Q12036 173 aa6.84□□□□□ -1.31
SHH4YLR164W YLL006W-AQ3E814 58 aa6.84□□□□□ -1.31
SHH4YLR164W MDN1Q12019 4910 aaKnown RBP6.83□□□□□ -1.32
SHH4YLR164W YDL241WQ07738 123 aa6.82□□□□□ -1.32
SHH4YLR164W MBF1O14467 151 aaKnown RBP6.81□□□□□ -1.32
SHH4YLR164W CPR1P14832 162 aaKnown RBP6.81□□□□□ -1.32
SHH4YLR164W UBC11P52492 156 aa6.81□□□□□ -1.32
SHH4YLR164W YPR170W-BP0C5R9 85 aa6.8□□□□□ -1.32
SHH4YLR164W SMP1P38128 452 aa6.8□□□□□ -1.32
SHH4YLR164W YML079WQ03629 201 aa6.8□□□□□ -1.32
SHH4YLR164W ANB1P19211 157 aa6.79□□□□□ -1.32
SHH4YLR164W MET32Q12041 191 aa6.79□□□□□ -1.32
SHH4YLR164W SNA2P56508 79 aa6.78□□□□□ -1.32
SHH4YLR164W YLR296WQ05898 108 aa6.78□□□□□ -1.32
SHH4YLR164W AQY2P0CD90 149 aa6.77□□□□□ -1.33
SHH4YLR164W YER181CP40097 107 aa6.77□□□□□ -1.33
SHH4YLR164W YNL198CP40166 100 aa6.77□□□□□ -1.33
SHH4YLR164W MVB12P42939 101 aa6.77□□□□□ -1.33
SHH4YLR164W SMD1Q02260 146 aaPredicted RBP6.77□□□□□ -1.33
SHH4YLR164W PAI3P01094 68 aa6.76□□□□□ -1.33
SHH4YLR164W IGD1P43598 195 aa6.76□□□□□ -1.33
SHH4YLR164W HPA2Q06592 156 aa6.76□□□□□ -1.33
SHH4YLR164W YKL023C-AQ2V2P3 75 aa6.76□□□□□ -1.33
SHH4YLR164W MRP10O75012 95 aa6.75□□□□□ -1.33
SHH4YLR164W UIP3P39547 235 aa6.75□□□□□ -1.33
SHH4YLR164W YDR034C-AP0C289 58 aa6.74□□□□□ -1.33
SHH4YLR164W ARO2P28777 376 aaKnown RBP6.74□□□□□ -1.33
SHH4YLR164W YIA6P40556 373 aa6.74□□□□□ -1.33
SHH4YLR164W EOS1P53938 366 aa6.74□□□□□ -1.33
SHH4YLR164W RGM1Q00453 211 aa6.74□□□□□ -1.33
SHH4YLR164W ABF2Q02486 183 aa6.74□□□□□ -1.33
SHH4YLR164W LCL2Q08045 131 aa6.74□□□□□ -1.33
SHH4YLR164W YDR029WQ12111 104 aa6.74□□□□□ -1.33
SHH4YLR164W YIL102C-AQ2V2P5 75 aa6.74□□□□□ -1.33
SHH4YLR164W YPL229WQ99395 206 aa6.73□□□□□ -1.33
SHH4YLR164W PEX22P39718 180 aa6.72□□□□□ -1.33
SHH4YLR164W GAT4P40569 121 aa6.72□□□□□ -1.33
SHH4YLR164W YFL019CP43576 117 aa6.72□□□□□ -1.33
SHH4YLR164W YOR034C-AQ3E735 80 aa6.72□□□□□ -1.33
SHH4YLR164W TMA7Q3E764 64 aaKnown RBP6.72□□□□□ -1.33
SHH4YLR164W STF1P01098 86 aa6.71□□□□□ -1.34
SHH4YLR164W LSM6Q06406 86 aaKnown RBP6.71□□□□□ -1.34
SHH4YLR164W RPL29P05747 59 aaPredicted RBP6.7□□□□□ -1.34
SHH4YLR164W YBL039W-BP0C268 59 aa6.7□□□□□ -1.34
SHH4YLR164W AIM19P40502 157 aa6.7□□□□□ -1.34
SHH4YLR164W POP7P38291 140 aa6.69□□□□□ -1.34
SHH4YLR164W YHR130CP38834 111 aa6.69□□□□□ -1.34
SHH4YLR164W YOR020W-AQ3E824 90 aa6.69□□□□□ -1.34
SHH4YLR164W KNH1P50112 268 aa6.68□□□□□ -1.34
SHH4YLR164W YNL162W-AQ3E7A8 72 aa6.68□□□□□ -1.34
SHH4YLR164W NHP2P32495 156 aaPredicted RBP6.67□□□□□ -1.34
SHH4YLR164W IRC21Q04772 201 aa6.67□□□□□ -1.34
SHH4YLR164W Q0032Q9ZZX7 96 aa6.65□□□□□ -1.34
SHH4YLR164W ECM12O13529 151 aa6.64□□□□□ -1.35
SHH4YLR164W UBC4P15731 148 aa6.63□□□□□ -1.35
SHH4YLR164W COX10P21592 462 aa6.63□□□□□ -1.35
SHH4YLR164W ICY1Q04329 127 aa6.63□□□□□ -1.35
SHH4YLR164W YLR307C-AQ3E825 87 aa6.63□□□□□ -1.35
SHH4YLR164W HYP2P23301 157 aaKnown RBP6.62□□□□□ -1.35
SHH4YLR164W HUR1P45820 110 aa6.6□□□□□ -1.35
SHH4YLR164W YGL041C-BQ3E750 60 aa6.6□□□□□ -1.35
SHH4YLR164W MRPL24P36525 258 aaPredicted RBP6.59□□□□□ -1.35
SHH4YLR164W YLR236CA0A023PZG4 107 aa6.58□□□□□ -1.36
SHH4YLR164W YGL193CP53097 103 aa6.57□□□□□ -1.36
SHH4YLR164W MPC3P53311 146 aa6.56□□□□□ -1.36
SHH4YLR164W YBR230W-AQ3E762 66 aa6.56□□□□□ -1.36
SHH4YLR164W MSA2P36157 363 aa6.55□□□□□ -1.36
SHH4YLR164W DSE2P38844 325 aa6.53□□□□□ -1.36
SHH4YLR164W RPL26AP05743 127 aaKnown RBP6.52□□□□□ -1.37
SHH4YLR164W RPL26BP53221 127 aaKnown RBP6.52□□□□□ -1.37
SHH4YLR164W YJL127C-BQ3E828 52 aa6.52□□□□□ -1.37
SHH4YLR164W YLR156WP0CE96 114 aa6.51□□□□□ -1.37
SHH4YLR164W YLR159WP0CE97 114 aa6.51□□□□□ -1.37
SHH4YLR164W YLR161WP0CE98 114 aa6.51□□□□□ -1.37
SHH4YLR164W YPL257WQ08974 193 aa6.51□□□□□ -1.37
SHH4YLR164W YNL042W-BQ3E7Z2 85 aa6.51□□□□□ -1.37
SHH4YLR164W FYV5P25585 152 aa6.5□□□□□ -1.37
SHH4YLR164W GIS2P53849 153 aaKnown RBP RIP-Chip data6.5□□□□□ -1.37not detected
SHH4YLR164W LCL1Q02786 101 aa6.48□□□□□ -1.37
SHH4YLR164W DUT1P33317 147 aa6.46□□□□□ -1.38
SHH4YLR164W SOH1P38633 127 aa6.45□□□□□ -1.38
SHH4YLR164W MMS2P53152 137 aa6.45□□□□□ -1.38
SHH4YLR164W DDR2P89113 61 aa6.45□□□□□ -1.38
SHH4YLR164W YJR107C-AP0CT86 78 aa6.43□□□□□ -1.38
SHH4YLR164W RPA12P32529 125 aaKnown RBP6.43□□□□□ -1.38
SHH4YLR164W SPT4P32914 102 aaPredicted RBP6.43□□□□□ -1.38
SHH4YLR164W BSC4P53841 131 aa6.41□□□□□ -1.38
SHH4YLR164W YHR007C-AQ07074 71 aa6.41□□□□□ -1.38
SHH4YLR164W DDR48P18899 430 aaKnown RBP6.4□□□□□ -1.38
SHH4YLR164W BET1P22804 142 aa6.4□□□□□ -1.38
SHH4YLR164W YER039C-AP0CD97 72 aa6.39□□□□□ -1.39
SHH4YLR164W YMR230W-AQ3E7B5 62 aa6.39□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms