RNA–Protein interactions for RNA: YDR254W

CHL4, Transcript of Outer kinetochore protein required for chromosome stability, yeast

Gene CHL4, Length 1,377 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CHL4	YDR254W	URB1	P34241	1764 aa	Known RBP	4.1	□□□□□ -1.75
CHL4	YDR254W	HSP150	P32478	413 aa		4.09	□□□□□ -1.75
CHL4	YDR254W	YHR022C	P38763	256 aa		4.09	□□□□□ -1.75
CHL4	YDR254W	VPS68	Q12016	184 aa		4.09	□□□□□ -1.75
CHL4	YDR254W	FLO9	P39712	1322 aa		4.09	□□□□□ -1.76
CHL4	YDR254W	SNF2	P22082	1703 aa		4.08	□□□□□ -1.76
CHL4	YDR254W	RPS22A	P0C0W1	130 aa	Known RBP	4.08	□□□□□ -1.76
CHL4	YDR254W	YHR214C-D	P0CX93	97 aa		4.08	□□□□□ -1.76
CHL4	YDR254W	MRP17	P28778	131 aa		4.08	□□□□□ -1.76
CHL4	YDR254W	FIT2	Q08906	153 aa		4.08	□□□□□ -1.76
CHL4	YDR254W	YOR343C	Q12484	108 aa		4.08	□□□□□ -1.76
CHL4	YDR254W	NHP2	P32495	156 aa	Predicted RBP	4.07	□□□□□ -1.76
CHL4	YDR254W	PMD1	P32634	1753 aa		4.07	□□□□□ -1.76
CHL4	YDR254W	KRE9	P39005	276 aa		4.06	□□□□□ -1.76
CHL4	YDR254W	YOR105W	Q08504	108 aa		4.05	□□□□□ -1.76
CHL4	YDR254W	APC1	P53886	1748 aa		4.05	□□□□□ -1.76
CHL4	YDR254W	RIM15	P43565	1770 aa		4.05	□□□□□ -1.76
CHL4	YDR254W	FPR1	P20081	114 aa	Known RBP	4.04	□□□□□ -1.76
CHL4	YDR254W	YBR027C	P38220	110 aa		4.04	□□□□□ -1.76
CHL4	YDR254W	POR2	P40478	281 aa		4.04	□□□□□ -1.76
CHL4	YDR254W	LST8	P41318	303 aa		4.04	□□□□□ -1.76
CHL4	YDR254W	COX12	Q01519	83 aa		4.04	□□□□□ -1.76
CHL4	YDR254W	YIL102C-A	Q2V2P5	75 aa		4.04	□□□□□ -1.76
CHL4	YDR254W	RPS22B	Q3E7Y3	130 aa	Known RBP	4.03	□□□□□ -1.76
CHL4	YDR254W	TY4B-J	P47024	1803 aa		4.03	□□□□□ -1.76
CHL4	YDR254W	HMRA2	P0CY13	119 aa		4.02	□□□□□ -1.77
CHL4	YDR254W	RPL26B	P53221	127 aa	Known RBP	4.02	□□□□□ -1.77
CHL4	YDR254W	LSM6	Q06406	86 aa	Known RBP	4.02	□□□□□ -1.77
CHL4	YDR254W	MOT1	P32333	1867 aa		4.02	□□□□□ -1.77
CHL4	YDR254W	YHL037C	P38733	133 aa		4.02	□□□□□ -1.77
CHL4	YDR254W	YDR114C	Q04597	100 aa		4.02	□□□□□ -1.77
CHL4	YDR254W	YMR321C	Q04898	105 aa		4.02	□□□□□ -1.77
CHL4	YDR254W	YOR314W	Q12506	109 aa		4.01	□□□□□ -1.77
CHL4	YDR254W	YCR095W-A	Q3E787	52 aa		4.01	□□□□□ -1.77
CHL4	YDR254W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	4	□□□□□ -1.77	not detected
CHL4	YDR254W	PDX3	P38075	228 aa	Known RBP	3.99	□□□□□ -1.77
CHL4	YDR254W	YER084W	P40057	128 aa		3.98	□□□□□ -1.77
CHL4	YDR254W	YJL144W	P47009	104 aa		3.98	□□□□□ -1.77
CHL4	YDR254W	TOR2	P32600	2474 aa	Known RBP	3.97	□□□□□ -1.77
CHL4	YDR254W	TAO3	P40468	2376 aa		3.97	□□□□□ -1.77
CHL4	YDR254W	MRPL38	P35996	138 aa	Predicted RBP	3.97	□□□□□ -1.77
CHL4	YDR254W	SNA2	P56508	79 aa		3.97	□□□□□ -1.77
CHL4	YDR254W	YCL048W-A	Q2V2Q2	79 aa		3.97	□□□□□ -1.77
CHL4	YDR254W	STT4	P37297	1900 aa		3.97	□□□□□ -1.77
CHL4	YDR254W	TIM12	P32830	109 aa		3.96	□□□□□ -1.78
CHL4	YDR254W	SPC1	P46965	94 aa		3.96	□□□□□ -1.78
CHL4	YDR254W	YKL065W-A	Q2V2P2	73 aa		3.96	□□□□□ -1.78
CHL4	YDR254W	YAL065C	O13511	128 aa		3.95	□□□□□ -1.78
CHL4	YDR254W	PFY1	P07274	126 aa		3.95	□□□□□ -1.78
CHL4	YDR254W	MRPL31	P14063	131 aa	Predicted RBP	3.95	□□□□□ -1.78
CHL4	YDR254W	YLR285C-A	Q3E771	56 aa		3.95	□□□□□ -1.78
CHL4	YDR254W	YER188C-A	P0C0V2	99 aa		3.94	□□□□□ -1.78
CHL4	YDR254W	MIX17	Q03667	156 aa		3.94	□□□□□ -1.78
CHL4	YDR254W	IRC21	Q04772	201 aa		3.94	□□□□□ -1.78
CHL4	YDR254W	YMR230W-A	Q3E7B5	62 aa		3.94	□□□□□ -1.78
CHL4	YDR254W	CUP1-1	P0CX80	61 aa		3.93	□□□□□ -1.78
CHL4	YDR254W	CUP1-2	P0CX81	61 aa		3.93	□□□□□ -1.78
CHL4	YDR254W	YJR146W	P47174	117 aa		3.93	□□□□□ -1.78
CHL4	YDR254W	YGL014C-A	P0C5N1	53 aa		3.92	□□□□□ -1.78
CHL4	YDR254W	SED1	Q01589	338 aa		3.92	□□□□□ -1.78
CHL4	YDR254W	YHR007C-A	Q07074	71 aa		3.92	□□□□□ -1.78
CHL4	YDR254W	YGR121W-A	Q3E816	71 aa		3.92	□□□□□ -1.78
CHL4	YDR254W	TEL1	P38110	2787 aa		3.92	□□□□□ -1.78
CHL4	YDR254W	YBL071C	P38185	102 aa		3.91	□□□□□ -1.78
CHL4	YDR254W	MRX7	P53869	86 aa		3.91	□□□□□ -1.78
CHL4	YDR254W	COX19	Q3E731	98 aa		3.91	□□□□□ -1.78
CHL4	YDR254W	CYR1	P08678	2026 aa	Known RBP	3.91	□□□□□ -1.78
CHL4	YDR254W	MPC2	P38857	129 aa		3.9	□□□□□ -1.78
CHL4	YDR254W	FAB1	P34756	2278 aa		3.9	□□□□□ -1.78
CHL4	YDR254W	QCR9	P22289	66 aa		3.89	□□□□□ -1.79
CHL4	YDR254W	YHR173C	P38864	112 aa		3.89	□□□□□ -1.79
CHL4	YDR254W	YLR162W	Q06235	118 aa		3.89	□□□□□ -1.79
CHL4	YDR254W	RDS3	Q06835	107 aa	Predicted RBP	3.89	□□□□□ -1.79
CHL4	YDR254W	CDC39	P25655	2108 aa	Known RBP	3.89	□□□□□ -1.79
CHL4	YDR254W	PAU6	P0CE90	120 aa		3.89	□□□□□ -1.79
CHL4	YDR254W	PAU18	P0CE91	120 aa		3.89	□□□□□ -1.79
CHL4	YDR254W	VPS55	P47111	140 aa		3.89	□□□□□ -1.79
CHL4	YDR254W	YGL260W	P53056	76 aa		3.89	□□□□□ -1.79
CHL4	YDR254W	PAU8	P0CE92	120 aa		3.88	□□□□□ -1.79
CHL4	YDR254W	PAU11	P0CE93	120 aa		3.88	□□□□□ -1.79
CHL4	YDR254W	AIM4	P38305	123 aa	Predicted RBP	3.88	□□□□□ -1.79
CHL4	YDR254W	PAU13	P38725	120 aa		3.88	□□□□□ -1.79
CHL4	YDR254W	PAU4	P53427	120 aa		3.88	□□□□□ -1.79
CHL4	YDR254W	PAU10	Q03050	120 aa		3.88	□□□□□ -1.79
CHL4	YDR254W	PAU9	Q3E770	120 aa		3.88	□□□□□ -1.79
CHL4	YDR254W	CCW14	O13547	238 aa		3.87	□□□□□ -1.79
CHL4	YDR254W	YIL163C	P40448	117 aa		3.87	□□□□□ -1.79
CHL4	YDR254W	YMR122C	Q03879	124 aa		3.87	□□□□□ -1.79
CHL4	YDR254W	NUP192	P47054	1683 aa		3.86	□□□□□ -1.79
CHL4	YDR254W	RPL33A	P05744	107 aa	Known RBP	3.86	□□□□□ -1.79
CHL4	YDR254W	FPR2	P32472	135 aa		3.86	□□□□□ -1.79
CHL4	YDR254W	SPI1	P40092	148 aa		3.86	□□□□□ -1.79
CHL4	YDR254W	YSY6	P38374	65 aa		3.85	□□□□□ -1.79
CHL4	YDR254W	BSC4	P53841	131 aa		3.84	□□□□□ -1.79
CHL4	YDR254W	YKL023C-A	Q2V2P3	75 aa		3.84	□□□□□ -1.79
CHL4	YDR254W	TAR1	Q8TGM6	124 aa		3.84	□□□□□ -1.79
CHL4	YDR254W	SLH1	P53327	1967 aa	Known RBP	3.84	□□□□□ -1.8
CHL4	YDR254W	YGR035W-A	Q45U48	73 aa		3.83	□□□□□ -1.8
CHL4	YDR254W	VAM10	Q08474	114 aa		3.82	□□□□□ -1.8
CHL4	YDR254W	YDR010C	Q12426	110 aa		3.82	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 31.1 ms