RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PHACTR2O75167 634 aa19.6■□□□□ 0.73
CLN3-241ENST00000635861 RTN3O95197 1032 aaPredicted RBP19.6■□□□□ 0.73
CLN3-241ENST00000635861 APBB3O95704 486 aa19.6■□□□□ 0.73
CLN3-241ENST00000635861 MYL1P05976 194 aa19.6■□□□□ 0.73
CLN3-241ENST00000635861 SLFN14P0C7P3 912 aa19.6■□□□□ 0.73
CLN3-241ENST00000635861 ZNF806P0C7X5 589 aa19.6■□□□□ 0.73
CLN3-241ENST00000635861 CUL4BQ13620 913 aa19.6■□□□□ 0.73
CLN3-241ENST00000635861 NME7Q9Y5B8 376 aa19.6■□□□□ 0.73
CLN3-241ENST00000635861 ACACBO00763 2458 aa19.6■□□□□ 0.73
CLN3-241ENST00000635861 OAS1P00973 400 aaKnown RBP19.59■□□□□ 0.73
CLN3-241ENST00000635861 EIF2DP41214 584 aaKnown RBP19.59■□□□□ 0.73
CLN3-241ENST00000635861 AFMP43652 599 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 MYL6P60660 151 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 DMC1Q14565 340 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 C11orf74Q86VG3 221 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 NUP93Q8N1F7 819 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 PARD3BQ8TEW8 1205 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 TNIP3Q96KP6 325 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 COMMD8Q9NX08 183 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 USP25Q9UHP3 1055 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 RCOR1Q9UKL0 485 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 P4HA1P13674 534 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 CASP1P29466 404 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 TAF10Q12962 218 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 BIRC3Q13489 604 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 ZNF699Q32M78 642 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 ZNF667Q5HYK9 610 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 TTC16Q8NEE8 873 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 EZH1Q92800 747 aaPredicted RBP19.59■□□□□ 0.73
CLN3-241ENST00000635861 DUSP9Q99956 384 aaKnown RBP19.59■□□□□ 0.73
CLN3-241ENST00000635861 ZNF518BQ9C0D4 1074 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 LINC00597Q9H2U6 94 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 DPEP3Q9H4B8 488 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 DMAC2Q9NW81 257 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 TBC1D14Q9P2M4 693 aa19.59■□□□□ 0.73
CLN3-241ENST00000635861 NXF1Q9UBU9 619 aaKnown RBP19.59■□□□□ 0.73
CLN3-241ENST00000635861 EPG5Q9HCE0 2579 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 PDXKO00764 312 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 KLRC4O43908 158 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 YWHAQP27348 245 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 OPRD1P41143 372 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 PXNP49023 591 aaPredicted RBP19.58■□□□□ 0.72
CLN3-241ENST00000635861 ZXDBP98169 803 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 NCOA4Q13772 614 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 FOXD4L5Q5VV16 416 aaPredicted RBP19.58■□□□□ 0.72
CLN3-241ENST00000635861 SNX30Q5VWJ9 437 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 KBTBD6Q86V97 674 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 ADGRG2Q8IZP9 1017 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 C12orf50Q8NA57 414 aaPredicted RBP19.58■□□□□ 0.72
CLN3-241ENST00000635861 FOXD4L4Q8WXT5 416 aaPredicted RBP19.58■□□□□ 0.72
CLN3-241ENST00000635861 TAF4BQ92750 862 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 OTUB2Q96DC9 234 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 B3GNT5Q9BYG0 378 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 RNF38Q9H0F5 515 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 ARRDC1-AS1Q9H2J1 176 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 EXOC1Q9NV70 894 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 CPQQ9Y646 472 aa19.58■□□□□ 0.72
CLN3-241ENST00000635861 ABCA7Q8IZY2 2146 aa19.57■□□□□ 0.72
CLN3-241ENST00000635861 DCDC2BA2VCK2 349 aa19.57■□□□□ 0.72
CLN3-241ENST00000635861 LRRIQ3A6PVS8 624 aaPredicted RBP19.57■□□□□ 0.72
CLN3-241ENST00000635861 RHOBTB1O94844 696 aa19.57■□□□□ 0.72
CLN3-241ENST00000635861 C4BPAP04003 597 aaKnown RBP19.57■□□□□ 0.72
CLN3-241ENST00000635861 RPN1P04843 607 aaKnown RBP19.57■□□□□ 0.72
CLN3-241ENST00000635861 TUBP50607 506 aa19.57■□□□□ 0.72
CLN3-241ENST00000635861 ELF2Q15723 593 aa19.57■□□□□ 0.72
CLN3-241ENST00000635861 PLK5Q496M5 336 aa19.57■□□□□ 0.72
CLN3-241ENST00000635861 HSF5Q4G112 596 aaPredicted RBP19.57■□□□□ 0.72
CLN3-241ENST00000635861 AASDHQ4L235 1098 aaPredicted RBP19.57■□□□□ 0.72
CLN3-241ENST00000635861 PLA2G2CQ5R387 149 aa19.57■□□□□ 0.72
CLN3-241ENST00000635861 NAIF1Q69YI7 327 aaPredicted RBP19.57■□□□□ 0.72
CLN3-241ENST00000635861 FILIP1Q7Z7B0 1213 aa19.57■□□□□ 0.72
CLN3-241ENST00000635861 SMARCD1Q96GM5 515 aa19.57■□□□□ 0.72
CLN3-241ENST00000635861 HHIPQ96QV1 700 aa19.57■□□□□ 0.72
CLN3-241ENST00000635861 DMAP1Q9NPF5 467 aaPredicted RBP19.57■□□□□ 0.72
CLN3-241ENST00000635861 E2F8A0AVK6 867 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 IKBKBO14920 756 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 ACTN4O43707 911 aaKnown RBP19.56■□□□□ 0.72
CLN3-241ENST00000635861 KIF20AO95235 890 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 ADH1CP00326 375 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 CYP17A1P05093 508 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 ADRB1P08588 477 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 TRIM21P19474 475 aaKnown RBP19.56■□□□□ 0.72
CLN3-241ENST00000635861 HOXC13P31276 330 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 CACNA2D1P54289 1103 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 MRPS21P82921 87 aaKnown RBP19.56■□□□□ 0.72
CLN3-241ENST00000635861 STK4Q13043 487 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 SGSM1Q2NKQ1 1148 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 FOXD4L6Q3SYB3 417 aaPredicted RBP19.56■□□□□ 0.72
CLN3-241ENST00000635861 FOXD4L3Q6VB84 417 aaPredicted RBP19.56■□□□□ 0.72
CLN3-241ENST00000635861 FAM35AQ86V20 835 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 KIAA0895Q8NCT3 520 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 PLEKHO2Q8TD55 490 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 TMC2Q8TDI7 906 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 USP33Q8TEY7 942 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 FBXO32Q969P5 355 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 KCTD10Q9H3F6 313 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 VPS45Q9NRW7 570 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 TMEM30AQ9NV96 361 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 IL37Q9NZH6 218 aa19.56■□□□□ 0.72
CLN3-241ENST00000635861 SERTAD1Q9UHV2 236 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms