RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 PKDCCQ504Y2 493 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 PRSS36Q5K4E3 855 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 PIGZQ86VD9 579 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 TDRD5Q8NAT2 981 aaKnown RBP20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 ITFG1Q8TB96 612 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 ING5Q8WYH8 240 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 SECISBP2LQ93073 1101 aaKnown RBP20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 FBXO32Q969P5 355 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 TCEAL4Q96EI5 215 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 RPGRIP1Q96KN7 1286 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 SLITRK1Q96PX8 696 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 ATXN3LQ9H3M9 355 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 USTQ9Y2C2 406 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 CEP83Q9Y592 693 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 DENND4CQ5VZ89 1909 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 MYO16Q9Y6X6 1858 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 A0A1W2PQJ5 194 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 A0A1W2PRU2 124 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 HHLA1C9JL84 531 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 BMP1P13497 986 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 FERP16591 822 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 CCR2P41597 374 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 PLA2G4AP47712 749 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 USP46P62068 366 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 ARID5AQ03989 594 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 TRIM14Q14142 442 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 SPECC1LQ69YQ0 1117 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 DENND1BQ6P3S1 775 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 GAREM2Q75VX8 874 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 ZNF677Q86XU0 584 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 ADHFE1Q8IWW8 467 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 PDZD8Q8NEN9 1154 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 SCAMP5Q8TAC9 235 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 SHKBP1Q8TBC3 707 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 BAP1Q92560 729 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 MRPS31Q92665 395 aaKnown RBP20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 TTYH3Q9C0H2 523 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 NUCKS1Q9H1E3 243 aaKnown RBP20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 SLITRK6Q9H5Y7 841 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 IL21Q9HBE4 155 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 LRRC4Q9HBW1 653 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 TRPM5Q9NZQ8 1165 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 CDH7Q9ULB5 785 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 PCDHGC3Q9UN70 934 aa20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 ZFP37Q9Y6Q3 630 aaPredicted RBP20.16■□□□□ 0.82
SQSTM1-216ENST00000626660 TPM1P09493 284 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 CEBPBP17676 345 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 SP100P23497 879 aaPredicted RBP20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 PPP3CCP48454 512 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 SFMBT2Q5VUG0 894 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 GPRIN1Q7Z2K8 1008 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 VSTM4Q8IW00 320 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 EPS8L1Q8TE68 723 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 OVCA2Q8WZ82 227 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 FGF13Q92913 245 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 GDE1Q9NZC3 331 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 IL37Q9NZH6 218 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 LUC7L2Q9Y383 392 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 OBSL1O75147 1896 aa20.15■□□□□ 0.82
SQSTM1-216ENST00000626660 LRRC53A6NM62 1247 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 TULP2O00295 520 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 F11P03951 625 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 GJA1P17302 382 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 KIF11P52732 1056 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 TAF10Q12962 218 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 TEAD2Q15562 447 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 ASIC2Q16515 512 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 TAF3Q5VWG9 929 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 NOP9Q86U38 636 aaKnown RBP20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 GPIHBP1Q8IV16 184 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 NPAS3Q8IXF0 933 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 SIX6OS1Q8N1H7 587 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 PLCD3Q8N3E9 789 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 SLC35F5Q8WV83 523 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 CPLX3Q8WVH0 158 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 KCTD13Q8WZ19 329 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 FAM122AQ96E09 287 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 HSFY1Q96LI6 401 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 NOX5Q96PH1 765 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 MYADMQ96S97 322 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 LHX5Q9H2C1 402 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 ZMYM5Q9UJ78 669 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 CAPN11Q9UMQ6 739 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 ANAPC1Q9H1A4 1944 aa20.14■□□□□ 0.81
SQSTM1-216ENST00000626660 NCOR1O75376 2440 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 AP5Z1O43299 807 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 MOSPD3O75425 235 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 CFHP08603 1231 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 DDX6P26196 483 aaKnown RBP eCLIP20.13■□□□□ 0.811e-7■□□□□ 8.8
SQSTM1-216ENST00000626660 GPD2P43304 727 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 ACADSBP45954 432 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 RGS7P49802 495 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 TKTL1P51854 596 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 ZBED6P86452 979 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 CYP4F8P98187 520 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 RAB41Q5JT25 222 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 GPR158Q5T848 1215 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 PMF1Q6P1K2 205 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 PASD1Q8IV76 773 aa20.13■□□□□ 0.81
SQSTM1-216ENST00000626660 STK32AQ8WU08 396 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms