RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 TPSD1Q9BZJ3 242 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 SMPD4Q9NXE4 827 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 MMP17Q9ULZ9 603 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 CPQQ9Y646 472 aa25.34■■□□□ 1.65
CPSF1-214ENST00000622776 MYOFQ9NZM1 2061 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 SLC9A3R1O14745 358 aaPredicted RBP25.33■■□□□ 1.65
CPSF1-214ENST00000622776 CLIC2O15247 247 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 SPTLC2O15270 562 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 STX6O43752 255 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 KCNK5O95279 499 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 OAS1P00973 400 aaKnown RBP25.33■■□□□ 1.65
CPSF1-214ENST00000622776 CACNA2D1P54289 1103 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 CYP24A1Q07973 514 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 TAF10Q12962 218 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 DHCR24Q15392 516 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 WDR72Q3MJ13 1102 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 TDRD10Q5VZ19 366 aaKnown RBP25.33■■□□□ 1.65
CPSF1-214ENST00000622776 ANO7Q6IWH7 933 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 CNNM4Q6P4Q7 775 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 RASSF3Q86WH2 238 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 CCDC33Q8N5R6 958 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 NUP205Q92621 2012 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 DHX58Q96C10 678 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 FOXD4L1Q9NU39 408 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 TMEM30AQ9NV96 361 aa25.33■■□□□ 1.65
CPSF1-214ENST00000622776 THADAQ6YHU6 1953 aa25.33■■□□□ 1.64
CPSF1-214ENST00000622776 MYO18AQ92614 2054 aaKnown RBP25.32■■□□□ 1.64
CPSF1-214ENST00000622776 CYP2J2P51589 502 aa25.32■■□□□ 1.64
CPSF1-214ENST00000622776 TNNC1P63316 161 aa25.32■■□□□ 1.64
CPSF1-214ENST00000622776 MRPS21P82921 87 aaKnown RBP25.32■■□□□ 1.64
CPSF1-214ENST00000622776 PMS2CLQ68D20 193 aa25.32■■□□□ 1.64
CPSF1-214ENST00000622776 XXYLT1Q8NBI6 393 aa25.32■■□□□ 1.64
CPSF1-214ENST00000622776 CNOT6LQ96LI5 555 aaKnown RBP25.32■■□□□ 1.64
CPSF1-214ENST00000622776 SLITRK1Q96PX8 696 aa25.32■■□□□ 1.64
CPSF1-214ENST00000622776 ZNF518BQ9C0D4 1074 aa25.32■■□□□ 1.64
CPSF1-214ENST00000622776 ELOVL4Q9GZR5 314 aa25.32■■□□□ 1.64
CPSF1-214ENST00000622776 DPEP3Q9H4B8 488 aa25.32■■□□□ 1.64
CPSF1-214ENST00000622776 CFAP97Q9P2B7 532 aa25.32■■□□□ 1.64
CPSF1-214ENST00000622776 TFIP11Q9UBB9 837 aaKnown RBP25.32■■□□□ 1.64
CPSF1-214ENST00000622776 SCAMP3O14828 347 aaKnown RBP25.31■■□□□ 1.64
CPSF1-214ENST00000622776 PPP6R2O75170 966 aa25.31■■□□□ 1.64
CPSF1-214ENST00000622776 SLC6A11P48066 632 aa25.31■■□□□ 1.64
CPSF1-214ENST00000622776 SNRPFP62306 86 aaKnown RBP25.31■■□□□ 1.64
CPSF1-214ENST00000622776 SHC2P98077 582 aa25.31■■□□□ 1.64
CPSF1-214ENST00000622776 CRY1Q16526 586 aa25.31■■□□□ 1.64
CPSF1-214ENST00000622776 NELFCDQ8IXH7 590 aa25.31■■□□□ 1.64
CPSF1-214ENST00000622776 IQUBQ8NA54 791 aa25.31■■□□□ 1.64
CPSF1-214ENST00000622776 ZNF516Q92618 1163 aa25.31■■□□□ 1.64
CPSF1-214ENST00000622776 C7orf25Q9BPX7 421 aa25.31■■□□□ 1.64
CPSF1-214ENST00000622776 C4orf47A7E2U8 309 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 A8MXQ7 604 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 CLDN5O00501 218 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 MBL2P11226 248 aaPredicted RBP25.3■■□□□ 1.64
CPSF1-214ENST00000622776 BCKDHBP21953 392 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 MYL6P60660 151 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 MESP2Q0VG99 397 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 IFRD2Q12894 506 aaPredicted RBP25.3■■□□□ 1.64
CPSF1-214ENST00000622776 TRPC3Q13507 836 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 RHBDF2Q6PJF5 856 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 SFTPA1Q8IWL2 248 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 MDGA1Q8NFP4 955 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 SCFD1Q8WVM8 642 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 PNKPQ96T60 521 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 B3GNT5Q9BYG0 378 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 UBE4BO95155 1302 aa25.3■■□□□ 1.64
CPSF1-214ENST00000622776 LNP1A1A4G5 178 aa25.29■■□□□ 1.64
CPSF1-214ENST00000622776 STAU1O95793 577 aaKnown RBP25.29■■□□□ 1.64
CPSF1-214ENST00000622776 HNRNPLP14866 589 aaKnown RBP eCLIP25.29■■□□□ 1.64
CPSF1-214ENST00000622776 YWHAQP27348 245 aa25.29■■□□□ 1.64
CPSF1-214ENST00000622776 EIF2DP41214 584 aaKnown RBP25.29■■□□□ 1.64
CPSF1-214ENST00000622776 PSAPL1Q6NUJ1 521 aa25.29■■□□□ 1.64
CPSF1-214ENST00000622776 TMEM92Q6UXU6 159 aa25.29■■□□□ 1.64
CPSF1-214ENST00000622776 TTC30AQ86WT1 665 aa25.29■■□□□ 1.64
CPSF1-214ENST00000622776 DDX42Q86XP3 938 aaKnown RBP eCLIP25.29■■□□□ 1.64
CPSF1-214ENST00000622776 NUP93Q8N1F7 819 aa25.29■■□□□ 1.64
CPSF1-214ENST00000622776 B3GALNT2Q8NCR0 500 aa25.29■■□□□ 1.64
CPSF1-214ENST00000622776 ZNF396Q96N95 335 aaPredicted RBP25.29■■□□□ 1.64
CPSF1-214ENST00000622776 GZF1Q9H116 711 aaPredicted RBP25.29■■□□□ 1.64
CPSF1-214ENST00000622776 XYLT2Q9H1B5 865 aa25.29■■□□□ 1.64
CPSF1-214ENST00000622776 NXF1Q9UBU9 619 aaKnown RBP25.29■■□□□ 1.64
CPSF1-214ENST00000622776 CUTAO60888 179 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 ADH1CP00326 375 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 APODP05090 189 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 CHRM1P11229 460 aaPredicted RBP25.28■■□□□ 1.64
CPSF1-214ENST00000622776 ATICP31939 592 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 EHHADHQ08426 723 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 SHC4Q6S5L8 630 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 UNC13DQ70J99 1090 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 CYP2U1Q7Z449 544 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 ALLCQ8N6M5 410 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 OLIG1Q8TAK6 271 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 SYAP1Q96A49 352 aaPredicted RBP25.28■■□□□ 1.64
CPSF1-214ENST00000622776 TBC1D14Q9P2M4 693 aa25.28■■□□□ 1.64
CPSF1-214ENST00000622776 ASCC3Q8N3C0 2202 aaKnown RBP25.27■■□□□ 1.64
CPSF1-214ENST00000622776 KHNYNO15037 678 aaKnown RBP25.27■■□□□ 1.64
CPSF1-214ENST00000622776 ALDH1A2O94788 518 aa25.27■■□□□ 1.64
CPSF1-214ENST00000622776 RTN3O95197 1032 aaPredicted RBP25.27■■□□□ 1.64
CPSF1-214ENST00000622776 KAT7O95251 611 aa25.27■■□□□ 1.64
CPSF1-214ENST00000622776 KLF8O95600 359 aaPredicted RBP25.27■■□□□ 1.64
CPSF1-214ENST00000622776 HSF5Q4G112 596 aaPredicted RBP25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms