RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 RAB3IPQ96QF0 476 aaPredicted RBP15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 MROH8Q9H579 483 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 ADGRA2Q96PE1 1338 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 CYP2C9P11712 490 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 LCP1P13796 627 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 LAMB3Q13751 1172 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 TMEM132DQ14C87 1099 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 GRIK4Q16099 956 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 GBP7Q8N8V2 638 aaPredicted RBP15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 PITPNM3Q9BZ71 974 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 ELOVL4Q9GZR5 314 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 TMEM134Q9H6X4 195 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 DIS3Q9Y2L1 958 aaKnown RBP15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 KIAA0100Q14667 2235 aaKnown RBP15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 ADCY6O43306 1168 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 CBX6O95503 412 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 FESP07332 822 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 MMP8P22894 467 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 SIX1Q15475 284 aaPredicted RBP15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 ZBED8Q8IZ13 594 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 ATL2Q8NHH9 583 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 ALG13Q9NP73 1137 aaKnown RBP15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 FER1L6Q2WGJ9 1857 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 C22orf31O95567 290 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 GM2AP17900 193 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 ACAT1P24752 427 aaKnown RBP15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 IL1R2P27930 398 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 ATXN1P54253 815 aaKnown RBP15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 SETDB1Q15047 1291 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 RFX8Q6ZV50 586 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 RBM15Q96T37 977 aaKnown RBP eCLIP15.13■□□□□ 0.017e-7■■■□□ 17.3
SHROOM1-208ENST00000617339 RNPEPL1Q9HAU8 725 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 DPP3Q9NY33 737 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 IP6K2Q9UHH9 426 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 HTTP42858 3142 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 PRRC2BQ5JSZ5 2229 aaKnown RBP15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 ITGBL1O95965 494 aaPredicted RBP15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 IGFBP6P24592 240 aaPredicted RBP15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 ASPAP45381 313 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 DNAJC3Q13217 504 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 GPR142Q7Z601 462 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 FAM71DQ8N9W8 422 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 SEC14L1Q92503 715 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 CFAP57Q96MR6 1250 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 C2orf40Q9H1Z8 148 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 RNF39Q9H2S5 420 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 NXF3Q9H4D5 531 aaKnown RBP15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 NKIRAS1Q9NYS0 192 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 TUBGCP4Q9UGJ1 667 aa15.13■□□□□ 0.01
SHROOM1-208ENST00000617339 ZC3H11AO75152 810 aaKnown RBP eCLIP15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 ERBB2P04626 1255 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 PDGFRAP16234 1089 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 PTDSS1P48651 473 aaKnown RBP15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 ZNF252P-AS1Q0IIN9 211 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 TSNAXIP1Q2TAA8 658 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 BBS9Q3SYG4 887 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 VSTM1Q6UX27 236 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 C4orf33Q8N1A6 199 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 CCDC89Q8N998 374 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 ACTL9Q8TC94 416 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 DTX3LQ8TDB6 740 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 DNAJC9Q8WXX5 260 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 MAK16Q9BXY0 300 aaKnown RBP15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 C12orf65Q9H3J6 166 aaKnown RBP15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 SCINQ9Y6U3 715 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 PHIPQ8WWQ0 1821 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 BHMG1C9JSJ3 638 aaPredicted RBP15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 E5RJQ4 531 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 PEX11AO75192 247 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 SNAI1O95863 264 aaPredicted RBP15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 KRT15P19012 456 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 CALB2P22676 271 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 KLC1Q07866 573 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 ZNF618Q5T7W0 954 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 APBB1IPQ7Z5R6 666 aaPredicted RBP15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 FAM13CQ8NE31 585 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 NPLOC4Q8TAT6 608 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 RSAD2Q8WXG1 361 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 XYLT2Q9H1B5 865 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 STYXL1Q9Y6J8 313 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 FSCN2O14926 492 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 RNF8O76064 485 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 MICAL2O94851 1124 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 PGK1P00558 417 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 OAS1P00973 400 aaKnown RBP15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 CDH6P55285 790 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 PTPN11Q06124 597 aaPredicted RBP15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 MCL1Q07820 350 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 LAMC2Q13753 1193 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 RCN2Q14257 317 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 SNF8Q96H20 258 aa15.12■□□□□ 0.01
SHROOM1-208ENST00000617339 TMEM191CA6NGB0 347 aa15.11■□□□□ 0.01
SHROOM1-208ENST00000617339 H7C0C1 242 aa15.11■□□□□ 0.01
SHROOM1-208ENST00000617339 UNC5CO95185 931 aa15.11■□□□□ 0.01
SHROOM1-208ENST00000617339 ATP5OP48047 213 aa15.11■□□□□ 0.01
SHROOM1-208ENST00000617339 OTUD4Q01804 1114 aaKnown RBP15.11■□□□□ 0.01
SHROOM1-208ENST00000617339 USP4Q13107 963 aa15.11■□□□□ 0.01
SHROOM1-208ENST00000617339 CGB2Q6NT52 195 aa15.11■□□□□ 0.01
SHROOM1-208ENST00000617339 TAPT1Q6NXT6 567 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms