RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 SCD5Q86SK9 330 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 PASD1Q8IV76 773 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 ELOA2Q8IYF1 753 aaPredicted RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 ELMOD1Q8N336 334 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 PLCD3Q8N3E9 789 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 ZFRQ96KR1 1074 aaKnown RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 GTPBP4Q9BZE4 634 aaKnown RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 INTS2Q9H0H0 1204 aaKnown RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 UBE2TQ9NPD8 197 aaPredicted RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 ARHGEF3Q9NR81 526 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 GCNT4Q9P109 453 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 KNL1Q8NG31 2342 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 SYCE3A1L190 88 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 COCHO43405 550 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 STAU1O95793 577 aaKnown RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 CKMP06732 381 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 CD19P15391 556 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 MCCD1P59942 119 aaPredicted RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 PDE4CQ08493 712 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 DMWDQ09019 674 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 NFE2Q16621 373 aaPredicted RBP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 PMF1Q6P1K2 205 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 BHLHA9Q7RTU4 235 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 FRMD5Q7Z6J6 570 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 PHLDB2Q86SQ0 1253 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 CRYBG2Q8N1P7 616 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 EDEM1Q92611 657 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 GPR88Q9GZN0 384 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 BRD9Q9H8M2 597 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 DPP7Q9UHL4 492 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 TSPAN16Q9UKR8 245 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.04□□□□□ -1.44
CPNE3-208ENST00000614678 OTOGLQ3ZCN5 2332 aa6.04□□□□□ -1.44
CPNE3-208ENST00000614678 ABCA7Q8IZY2 2146 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 A0A1W2PQH9 124 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 TRDMT1O14717 391 aaKnown RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 MAPK13O15264 365 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 SLC16A3O15427 465 aaKnown RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 HMBSP08397 361 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 PSMC3P17980 439 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 HDCP19113 662 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 PON1P27169 355 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 WEE1P30291 646 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 TRIM65Q6PJ69 517 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 PIGZQ86VD9 579 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 MAML2Q8IZL2 1156 aaPredicted RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 FBXL6Q8N531 539 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 SH3RF2Q8TEC5 729 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 TMEM176AQ96HP8 235 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 NT5C1AQ9BXI3 368 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 MFSD1Q9H3U5 465 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 PLK2Q9NYY3 685 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 GDE1Q9NZC3 331 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 DLGAP2Q9P1A6 1054 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 CPQQ9Y646 472 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 NUP210Q8TEM1 1887 aaPredicted RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 PES1O00541 588 aaKnown RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 NOL4O94818 638 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 SLC6A11P48066 632 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 PON2Q15165 354 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 GOLGA7BQ2TAP0 167 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 RBM43Q6ZSC3 357 aaKnown RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 MYEOVQ96EZ4 313 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 MYRFLQ96LU7 910 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 TRMT61BQ9BVS5 477 aaKnown RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 C1QTNF1Q9BXJ1 281 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 ADAM33Q9BZ11 813 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 TDP1Q9NUW8 608 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 IGSF9Q9P2J2 1179 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 FAM170BA6NMN3 283 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 MSI1O43347 362 aaKnown RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 GTF2H1P32780 548 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 USP8P40818 1118 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 SRSF5Q13243 272 aaKnown RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 VEPH1Q14D04 833 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 ANO6Q4KMQ2 910 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 APTXQ7Z2E3 356 aaKnown RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 SLC47A2Q86VL8 602 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 MIB1Q86YT6 1006 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 ZNF687Q8N1G0 1237 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 NAT16Q8N8M0 369 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 ADAM32Q8TC27 787 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 FBXO32Q969P5 355 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 TASP1Q9H6P5 420 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 SFMBT1Q9UHJ3 866 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 HOOK1Q9UJC3 728 aaKnown RBP6.03□□□□□ -1.44
CPNE3-208ENST00000614678 CLEC4EQ9ULY5 219 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 PCDHB4Q9Y5E5 795 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 FHOD1Q9Y613 1164 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 PIAS3Q9Y6X2 628 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 PATJQ8NI35 1801 aa6.03□□□□□ -1.44
CPNE3-208ENST00000614678 KCNJ18B7U540 433 aa6.02□□□□□ -1.45
CPNE3-208ENST00000614678 FOXN3O00409 490 aaPredicted RBP6.02□□□□□ -1.45
CPNE3-208ENST00000614678 TEX33O43247 280 aa6.02□□□□□ -1.45
CPNE3-208ENST00000614678 AFPP02771 609 aaKnown RBP6.02□□□□□ -1.45
CPNE3-208ENST00000614678 CSH1P0DML2 217 aa6.02□□□□□ -1.45
CPNE3-208ENST00000614678 CSH2P0DML3 217 aa6.02□□□□□ -1.45
CPNE3-208ENST00000614678 LCP1P13796 627 aa6.02□□□□□ -1.45
CPNE3-208ENST00000614678 AVPR1AP37288 418 aa6.02□□□□□ -1.45
CPNE3-208ENST00000614678 STIM1Q13586 685 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms