RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 AGAP3Q96P47 875 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 CGRRF1Q99675 332 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 SYT15Q9BQS2 421 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 RSAD1Q9HA92 442 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 PRKAG3Q9UGI9 489 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 UBR2Q8IWV8 1755 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 SPDYE2BA6NHP3 402 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 APOL1O14791 398 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 PRKCBP05771 671 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 SPDYE6P0CI01 402 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 KCNA4P22459 653 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 MMP14P50281 582 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 TNFAIP1Q13829 316 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 DPYSL3Q14195 570 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 STXBP2Q15833 593 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 JOSD2Q8TAC2 188 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 SLCO2A1Q92959 643 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 QTRT2Q9H974 415 aaKnown RBP13.11□□□□□ -0.31
LIG1-221ENST00000613670 TAGLN3Q9UI15 199 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 USP18Q9UMW8 372 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 BCORQ6W2J9 1755 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 COL4A1P02462 1669 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 TCRBV9S1A1TA0A576 114 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 TMEM191CA6NGB0 347 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 CYB561D2O14569 222 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 CREB3O43889 395 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 TBX10O75333 385 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 CD48P09326 243 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 GEN1Q17RS7 908 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 TCHHL1Q5QJ38 904 aaPredicted RBP13.11□□□□□ -0.31
LIG1-221ENST00000613670 RNASEH2BQ5TBB1 312 aaKnown RBP13.11□□□□□ -0.31
LIG1-221ENST00000613670 HEATR6Q6AI08 1181 aaKnown RBP13.11□□□□□ -0.31
LIG1-221ENST00000613670 DENND1BQ6P3S1 775 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 RIPOR1Q6ZS17 1223 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 CPT1BQ92523 772 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 ZNF516Q92618 1163 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 PDP2Q9P2J9 529 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 POLIQ9UNA4 740 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 IRS2Q9Y4H2 1338 aa13.11□□□□□ -0.31
LIG1-221ENST00000613670 A0A1B0GUL6 1792 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 OAS1P00973 400 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 ALADP13716 330 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 TCN1P20061 433 aaPredicted RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 MIPP30301 263 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 GARSP41250 739 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 ABL2P42684 1182 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 DYNC1I2Q13409 638 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 UBAP2LQ14157 1087 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 ASRGL1Q7L266 308 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 POLNQ7Z5Q5 900 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 GALNT4Q8N4A0 578 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 DDX1Q92499 740 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 UTP4Q969X6 686 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 PPWD1Q96BP3 646 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 APOBEC3GQ9HC16 384 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 PAK5Q9P286 719 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 UBIAD1Q9Y5Z9 338 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 MYH14Q7Z406 1995 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 GSTA2P09210 222 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 ABCD1P33897 745 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 TNFSF9P41273 254 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 STAT5BP51692 787 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 TMED1Q13445 227 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 PLEKHA7Q6IQ23 1121 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 SULF1Q8IWU6 871 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 ZNF395Q9H8N7 513 aaPredicted RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 FAM49BQ9NUQ9 324 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 RABGEF1Q9UJ41 708 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 DRG1Q9Y295 367 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 INPP5FQ9Y2H2 1132 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 TCEA3O75764 348 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 ZMPSTE24O75844 475 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 CST3P01034 146 aaPredicted RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 MMP8P22894 467 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 AMPD1P23109 780 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 KDELR1P24390 212 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 STIP1P31948 543 aaKnown RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 ART3Q13508 389 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 PHF13Q86YI8 300 aaPredicted RBP13.1□□□□□ -0.31
LIG1-221ENST00000613670 WDR60Q8WVS4 1066 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 SLC38A10Q9HBR0 1119 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 AKT3Q9Y243 479 aa13.1□□□□□ -0.31
LIG1-221ENST00000613670 TCRBV7S3A2A0A539 114 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 ARL4AP40617 200 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 COPAP53621 1224 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 DEUP1Q05D60 604 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 LAMB3Q13751 1172 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 DCLK2Q8N568 766 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 RBM15BQ8NDT2 890 aaKnown RBP13.09□□□□□ -0.31
LIG1-221ENST00000613670 PRPF31Q8WWY3 499 aaKnown RBP13.09□□□□□ -0.31
LIG1-221ENST00000613670 SLC7A6OSQ96CW6 309 aaPredicted RBP13.09□□□□□ -0.31
LIG1-221ENST00000613670 PIDD1Q9HB75 910 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 COQ4Q9Y3A0 265 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 A0A0B4J269 797 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 AHCYL1O43865 530 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 ZNF862O60290 1169 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 ITGAVP06756 1048 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 LINGO3P0C6S8 592 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 AP1B1Q10567 949 aa13.09□□□□□ -0.31
LIG1-221ENST00000613670 CYTH1Q15438 398 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms