RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TAAR1Q96RJ0 339 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 SRPK1Q96SB4 655 aaKnown RBP19.15■□□□□ 0.66
UPF1-210ENST00000600689 ACSS3Q9H6R3 686 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 AGO4Q9HCK5 861 aaKnown RBP19.15■□□□□ 0.66
UPF1-210ENST00000600689 PIM2Q9P1W9 311 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 SHOC2Q9UQ13 582 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 HIRAP54198 1017 aaPredicted RBP19.15■□□□□ 0.66
UPF1-210ENST00000600689 MAP3K10Q02779 954 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 RFX6Q8HWS3 928 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 PPIL6Q8IXY8 311 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 ECSITQ9BQ95 431 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 FOXP3Q9BZS1 431 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 PCDH9Q9HC56 1237 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 SCINQ9Y6U3 715 aa19.15■□□□□ 0.66
UPF1-210ENST00000600689 PCNTO95613 3336 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 FER1L6Q2WGJ9 1857 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 TCRBV9S1A1TA0A576 114 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 SPECC1L-ADORA2AF8WAN1 911 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 OR6B1O95007 311 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 CDC16Q13042 620 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 PRKD1Q15139 912 aaPredicted RBP19.14■□□□□ 0.66
UPF1-210ENST00000600689 KLHL38Q2WGJ6 581 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 PLEKHA7Q6IQ23 1121 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 OR5B17Q8NGF7 314 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 ZNF606Q8WXB4 792 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 MFSD14AQ96MC6 490 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 NDNQ99608 321 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 GABBR1Q9UBS5 961 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 ZNF212Q9UDV6 495 aa19.14■□□□□ 0.66
UPF1-210ENST00000600689 PGM3O95394 542 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 LRRC23Q53EV4 343 aaPredicted RBP19.14■□□□□ 0.65
UPF1-210ENST00000600689 ARHGAP24Q8N264 748 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 APOL6Q9BWW8 343 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 GSTA2P09210 222 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 WEE2P0C1S8 567 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 PSMA2P25787 234 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 BPIFB4P59827 614 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 RSPH3Q86UC2 560 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 KCTD17Q8N5Z5 321 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 PPP1R14CQ8TAE6 165 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 CLIC5Q9NZA1 410 aa19.14■□□□□ 0.65
UPF1-210ENST00000600689 SEPT9Q9UHD8 586 aaPredicted RBP19.14■□□□□ 0.65
UPF1-210ENST00000600689 LOC100653049A0A140TA62 436 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 TM9SF1O15321 606 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 HNRNPCL1O60812 293 aaKnown RBP19.13■□□□□ 0.65
UPF1-210ENST00000600689 TOM1L1O75674 476 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 ZMPSTE24O75844 475 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 KRT34O76011 436 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 VNN1O95497 513 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 CDKN2BP42772 138 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 ZNF200P98182 395 aaPredicted RBP19.13■□□□□ 0.65
UPF1-210ENST00000600689 RALGPS1Q5JS13 557 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 CES4AQ5XG92 561 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 TMEM143Q96AN5 459 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 IQANK1A0A1B0GTG1 560 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 C6orf222P0C671 652 aaPredicted RBP19.13■□□□□ 0.65
UPF1-210ENST00000600689 RPS6P62753 249 aaKnown RBP19.13■□□□□ 0.65
UPF1-210ENST00000600689 AP2B1P63010 937 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 TMC2Q8TDI7 906 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 MZB1Q8WU39 189 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 DNAJC1Q96KC8 554 aaKnown RBP19.13■□□□□ 0.65
UPF1-210ENST00000600689 TRAPPC9Q96Q05 1148 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 TIPINQ9BVW5 301 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 PHACTR1Q9C0D0 580 aa19.13■□□□□ 0.65
UPF1-210ENST00000600689 ZNF541Q9H0D2 1346 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 TMEM191CA6NGB0 347 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 NFKBIEO00221 500 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 TMEM191BP0C7N4 346 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 CD19P15391 556 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 PTP4A2Q12974 167 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 MTERF2Q49AM1 385 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 HSF5Q4G112 596 aaPredicted RBP19.12■□□□□ 0.65
UPF1-210ENST00000600689 NBPF12Q5TAG4 269 aaPredicted RBP19.12■□□□□ 0.65
UPF1-210ENST00000600689 SYTL5Q8TDW5 730 aaPredicted RBP19.12■□□□□ 0.65
UPF1-210ENST00000600689 APOPT1Q96IL0 206 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 C20orf27Q9GZN8 174 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 PDP2Q9P2J9 529 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 ZNFX1Q9P2E3 1918 aaKnown RBP19.12■□□□□ 0.65
UPF1-210ENST00000600689 CXorf49A8MYA2 514 aaPredicted RBP19.12■□□□□ 0.65
UPF1-210ENST00000600689 LYPLA1O75608 230 aaPredicted RBP19.12■□□□□ 0.65
UPF1-210ENST00000600689 ACO1P21399 889 aaKnown RBP19.12■□□□□ 0.65
UPF1-210ENST00000600689 IL1R2P27930 398 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 SERPINB6P35237 376 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 SLC18A1P54219 525 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 MMRN1Q13201 1228 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 CMPK2Q5EBM0 449 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 MROH9Q5TGP6 573 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 TMEM130Q8N3G9 435 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 ZNF398Q8TD17 642 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 TUBB6Q9BUF5 446 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 SLC38A10Q9HBR0 1119 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 SLC9A2Q9UBY0 812 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 GJA3Q9Y6H8 435 aa19.12■□□□□ 0.65
UPF1-210ENST00000600689 LRRIQ4A6NIV6 560 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 WDR46O15213 610 aaKnown RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 RFC1P35251 1148 aaPredicted RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 EIF3EP60228 445 aaKnown RBP19.11■□□□□ 0.65
UPF1-210ENST00000600689 ASPHQ12797 758 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 GPAT2Q6NUI2 795 aa19.11■□□□□ 0.65
UPF1-210ENST00000600689 C1orf228Q6PIY5 440 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms