RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CCDC183Q5T5S1 534 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 SMYD5Q6GMV2 418 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 ARID3BQ8IVW6 561 aaPredicted RBP17.15■□□□□ 0.34
LSM4-206ENST00000600289 FAM114A1Q8IWE2 563 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 CMTM8Q8IZV2 173 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 NUP93Q8N1F7 819 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 C12orf29Q8N999 325 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 OVCA2Q8WZ82 227 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 NT5C1BQ96P26 610 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 MED10Q9BTT4 135 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 SLC46A2Q9BY10 475 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 PNPLA8Q9NP80 782 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 KRT82Q9NSB4 513 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 RALYQ9UKM9 306 aaKnown RBP17.15■□□□□ 0.34
LSM4-206ENST00000600289 PKD1L2Q7Z442 2459 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 FAM92AA1XBS5 289 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 AP1G2O75843 785 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 CFHP08603 1231 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 RAD23BP54727 409 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 USP46P62068 366 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 GPC5P78333 572 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 GCNT1Q02742 428 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 COL9A2Q14055 689 aaPredicted RBP17.14■□□□□ 0.33
LSM4-206ENST00000600289 RSPO4Q2I0M5 234 aaPredicted RBP17.14■□□□□ 0.33
LSM4-206ENST00000600289 ARHGAP17Q68EM7 881 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 DTWD2Q8NBA8 298 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 SLC4A11Q8NBS3 891 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 EHBP1Q8NDI1 1231 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 ZMIZ2Q8NF64 920 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 FLCNQ8NFG4 579 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 ST13P5Q8NFI4 369 aaPredicted RBP17.14■□□□□ 0.33
LSM4-206ENST00000600289 RSPRY1Q96DX4 576 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 CYFIP2Q96F07 1278 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 TMEM176AQ96HP8 235 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 KCNK16Q96T55 309 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 SMOQ99835 787 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 TRMT61BQ9BVS5 477 aaKnown RBP17.14■□□□□ 0.33
LSM4-206ENST00000600289 KIF9Q9HAQ2 790 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 FAM49BQ9NUQ9 324 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 FBXL21Q9UKT6 434 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 R4GN57 208 aa17.14■□□□□ 0.33
LSM4-206ENST00000600289 GTPBP10A4D1E9 387 aaKnown RBP17.13■□□□□ 0.33
LSM4-206ENST00000600289 HEPACAM2A8MVW5 462 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 PRAMEF12O95522 483 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 FAM200BP0CF97 657 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 VIPR2P41587 438 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 PDE6CP51160 858 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 TPD52L1Q16890 204 aaPredicted RBP17.13■□□□□ 0.33
LSM4-206ENST00000600289 PHLDB3Q6NSJ2 640 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 CLEC20AQ6ZU45 233 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 DCLK2Q8N568 766 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 CELF5Q8N6W0 485 aaKnown RBP17.13■□□□□ 0.33
LSM4-206ENST00000600289 PDZD8Q8NEN9 1154 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 ENOX1Q8TC92 643 aaKnown RBP17.13■□□□□ 0.33
LSM4-206ENST00000600289 IRF7Q92985 503 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 JAKMIP2Q96AA8 810 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 ARHGEF3Q9NR81 526 aa17.13■□□□□ 0.33
LSM4-206ENST00000600289 KRBA1A5PL33 1030 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 ARNTLO00327 626 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 CHADO15335 359 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 TCF3P15923 654 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 ACO1P21399 889 aaKnown RBP17.12■□□□□ 0.33
LSM4-206ENST00000600289 AVPR1AP37288 418 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 SLC5A3P53794 718 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 MLLT6P55198 1093 aaPredicted RBP17.12■□□□□ 0.33
LSM4-206ENST00000600289 STARD6P59095 220 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 PRKCQQ04759 706 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 MAN2A1Q16706 1144 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 SNX30Q5VWJ9 437 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 TXNDC8Q6A555 127 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 SIX5Q8N196 739 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 MAB21L3Q8N8X9 362 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 FAM81BQ96LP2 452 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 SLITRK1Q96PX8 696 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 DDX23Q9BUQ8 820 aaKnown RBP17.12■□□□□ 0.33
LSM4-206ENST00000600289 INTS2Q9H0H0 1204 aaKnown RBP17.12■□□□□ 0.33
LSM4-206ENST00000600289 TRPM5Q9NZQ8 1165 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 GCNT4Q9P109 453 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 KIAA1257Q9ULG3 409 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 COL4A3Q01955 1670 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 FAM208BQ5VWN6 2430 aa17.12■□□□□ 0.33
LSM4-206ENST00000600289 TRAV19A0A0A6YYK7 116 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 ZNF840PA6NDX5 716 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 HHLA1C9JL84 531 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 BEST1O76090 585 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 OLFM2O95897 454 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 PAEPP09466 180 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 USP17L7P0C7H9 530 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 ZDHHC11BP0C7U3 371 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 YWHAQP27348 245 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 ADORA2BP29275 332 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 TAF10Q12962 218 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 GRM2Q14416 872 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 STX1AQ16623 288 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 ARHGAP29Q52LW3 1261 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 ZNF394Q53GI3 561 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 PPP1R26Q5T8A7 1209 aaPredicted RBP17.11■□□□□ 0.33
LSM4-206ENST00000600289 SASS6Q6UVJ0 657 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 BPIFB1Q8TDL5 484 aa17.11■□□□□ 0.33
LSM4-206ENST00000600289 SHDQ96IW2 340 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms