RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 SLITRK6Q9H5Y7 841 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 UBE2TQ9NPD8 197 aaPredicted RBP13.49□□□□□ -0.25
UPF1-208ENST00000600012 SIX4Q9UIU6 781 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 C2CD2Q9Y426 696 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 PIAS3Q9Y6X2 628 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 SPTBN2O15020 2390 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 OR6C75A6NL08 312 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 GJA1P17302 382 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 POLR2BP30876 1174 aaKnown RBP13.48□□□□□ -0.25
UPF1-208ENST00000600012 VIPR2P41587 438 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 CCR3P51677 355 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 MLLT6P55198 1093 aaPredicted RBP13.48□□□□□ -0.25
UPF1-208ENST00000600012 JAM2P57087 298 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 NOP14P78316 857 aaKnown RBP13.48□□□□□ -0.25
UPF1-208ENST00000600012 LMNB2Q03252 620 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 TRPC3Q13507 836 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 TEAD2Q15562 447 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 ZBTB6Q15916 424 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 C1orf228Q6PIY5 440 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 NT5DC4Q86YG4 428 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 CCDC112Q8NEF3 446 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 SHKBP1Q8TBC3 707 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 MSANTD3Q96H12 275 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 KREMEN1Q96MU8 473 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 TSPAN18Q96SJ8 248 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 BAG1Q99933 345 aaPredicted RBP13.48□□□□□ -0.25
UPF1-208ENST00000600012 APOBEC3GQ9HC16 384 aaKnown RBP13.48□□□□□ -0.25
UPF1-208ENST00000600012 GMEB2Q9UKD1 530 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 PYCARDQ9ULZ3 195 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 DERAQ9Y315 318 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 FRYLO94915 3013 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 TSC2P49815 1807 aa13.48□□□□□ -0.25
UPF1-208ENST00000600012 RALGAPA1Q6GYQ0 2036 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 NCANO14594 1321 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 HEPACAM2A8MVW5 462 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 PRR5-ARHGAP8B1AHC4 643 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 VNN2O95498 520 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 ASS1P00966 412 aaKnown RBP13.47□□□□□ -0.25
UPF1-208ENST00000600012 OR4Q2P0C623 313 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 SKILP12757 684 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 TDGF1P13385 188 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 TYMPP19971 482 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 FECHP22830 423 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 ALDH1A3P47895 512 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 EPHB3P54753 998 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 ARHGAP8P85298 464 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 GPR17Q13304 367 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 DRAP1Q14919 205 aaPredicted RBP13.47□□□□□ -0.25
UPF1-208ENST00000600012 ASIC2Q16515 512 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 TSR1Q2NL82 804 aaKnown RBP13.47□□□□□ -0.25
UPF1-208ENST00000600012 ZNF699Q32M78 642 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 WDR44Q5JSH3 913 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 SFMBT2Q5VUG0 894 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 WDR59Q6PJI9 974 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 DSTYKQ6XUX3 929 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 TMC8Q8IU68 726 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 YAF2Q8IY57 180 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 CXorf38Q8TB03 319 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 CSGALNACT1Q8TDX6 532 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 PGLYRP2Q96PD5 576 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 CHP1Q99653 195 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 LRRC3Q9BY71 257 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 STK33Q9BYT3 514 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 IMPG2Q9BZV3 1241 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 LMAN1LQ9HAT1 526 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 DPP3Q9NY33 737 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 ITGA11Q9UKX5 1188 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 RAB23Q9ULC3 237 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 AGAP1Q9UPQ3 857 aa13.47□□□□□ -0.25
UPF1-208ENST00000600012 TIMM13Q9Y5L4 95 aaPredicted RBP13.47□□□□□ -0.25
UPF1-208ENST00000600012 TPRP12270 2363 aaKnown RBP13.46□□□□□ -0.25
UPF1-208ENST00000600012 DNAH14Q0VDD8 3507 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 A0A1W2PRU2 124 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 SOWAHDA6NJG2 315 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 F8VZ95 297 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 ARNTLO00327 626 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 PPEF2O14830 753 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 CHADO15335 359 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 CHRNB1P11230 501 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 PAX3P23760 479 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 STAT1P42224 750 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 ARID5AQ03989 594 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 DUSP4Q13115 394 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 MTF1Q14872 753 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 MEA1Q16626 185 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 OVOS1Q6IE37 1185 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 SCARA5Q6ZMJ2 495 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 CELF5Q8N6W0 485 aaKnown RBP13.46□□□□□ -0.25
UPF1-208ENST00000600012 ARID3AQ99856 593 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 XYLT2Q9H1B5 865 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 CRISPLD1Q9H336 500 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 C8orf33Q9H7E9 229 aaPredicted RBP13.46□□□□□ -0.25
UPF1-208ENST00000600012 ZNHIT6Q9NWK9 470 aaKnown RBP13.46□□□□□ -0.25
UPF1-208ENST00000600012 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.46□□□□□ -0.25
UPF1-208ENST00000600012 CDV3Q9UKY7 258 aaKnown RBP13.46□□□□□ -0.25
UPF1-208ENST00000600012 USP18Q9UMW8 372 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 ZKSCAN5Q9Y2L8 839 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 DAAM1Q9Y4D1 1078 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 ASB3Q9Y575 518 aa13.46□□□□□ -0.25
UPF1-208ENST00000600012 MTMR11A4FU01 709 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms