RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CPQQ9Y646 472 aa10.42□□□□□ -0.74
VRK3-216ENST00000599342 SLC9A3R1O14745 358 aaPredicted RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 FOXD2O60548 495 aaPredicted RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 RPP40O75818 363 aaKnown RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 OAS1P00973 400 aaKnown RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 C4BPAP04003 597 aaKnown RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 MBL2P11226 248 aaPredicted RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 TGM1P22735 817 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 YWHAQP27348 245 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 PIK3CAP42336 1068 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 PXNP49023 591 aaPredicted RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 CACNA2D1P54289 1103 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 CDH8P55286 799 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 CLDN10P78369 228 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 SLC7A9P82251 487 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 CSRP2Q16527 193 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 SGSM1Q2NKQ1 1148 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 NAIF1Q69YI7 327 aaPredicted RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 SYT13Q7L8C5 426 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 FAM35AQ86V20 835 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 FAM160A2Q8N612 972 aaPredicted RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 NETO1Q8TDF5 533 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 TMEM174Q8WUU8 243 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 GAB3Q8WWW8 586 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 OVCA2Q8WZ82 227 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 FBXO32Q969P5 355 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 HHIPQ96QV1 700 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 RTKNQ9BST9 563 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 IMPG2Q9BZV3 1241 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 LINC00597Q9H2U6 94 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 KCTD10Q9H3F6 313 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 FBRSL1Q9HCM7 1045 aaKnown RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 DMAP1Q9NPF5 467 aaPredicted RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 KRT82Q9NSB4 513 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 DMAC2Q9NW81 257 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 HPSEQ9Y251 543 aa10.41□□□□□ -0.74
VRK3-216ENST00000599342 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.41□□□□□ -0.74
VRK3-216ENST00000599342 MED19A0JLT2 244 aaPredicted RBP10.4□□□□□ -0.74
VRK3-216ENST00000599342 AXIN1O15169 862 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 AKAP3O75969 853 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 VNN1O95497 513 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 APBB3O95704 486 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 OLFM2O95897 454 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 HOXC13P31276 330 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 SLC5A3P53794 718 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 ATXN1P54253 815 aaKnown RBP10.4□□□□□ -0.74
VRK3-216ENST00000599342 DLG4P78352 724 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 ZXDBP98169 803 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 DMC1Q14565 340 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 ZACNQ401N2 412 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 PRR23CQ6ZRP0 262 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 CACNA2D4Q7Z3S7 1137 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 FILIP1Q7Z7B0 1213 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 ACOT1Q86TX2 421 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 KIAA1958Q8N8K9 716 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 TMC2Q8TDI7 906 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 TAF4BQ92750 862 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 CCDC34Q96HJ3 373 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 LOXL4Q96JB6 756 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 KCNK16Q96T55 309 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 SCAND2PQ9GZW5 306 aaPredicted RBP10.4□□□□□ -0.74
VRK3-216ENST00000599342 NACA2Q9H009 215 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 RNF38Q9H0F5 515 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 TMEM30AQ9NV96 361 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 CFAP97Q9P2B7 532 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 PTPRDP23468 1912 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 OTOGLQ3ZCN5 2332 aa10.4□□□□□ -0.74
VRK3-216ENST00000599342 GVINP1Q7Z2Y8 2422 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 HELZP42694 1942 aaKnown RBP10.39□□□□□ -0.75
VRK3-216ENST00000599342 GREB1Q4ZG55 1949 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 ANAPC1Q9H1A4 1944 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.39□□□□□ -0.75
VRK3-216ENST00000599342 IKBKBO14920 756 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 AP1G2O75843 785 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 RHOBTB3O94955 611 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 ADH1CP00326 375 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 CYP17A1P05093 508 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 KRT13P13646 458 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 CCDC130P13994 396 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 NR2F2P24468 414 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 VAMP7P51809 220 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 NDUFA8P51970 172 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 NDST1P52848 882 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 SEC13P55735 322 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 DHCR24Q15392 516 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 AASDHQ4L235 1098 aaPredicted RBP10.39□□□□□ -0.75
VRK3-216ENST00000599342 HECTD3Q5T447 861 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 INTS8Q75QN2 995 aaKnown RBP10.39□□□□□ -0.75
VRK3-216ENST00000599342 SV2AQ7L0J3 742 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 UNC93AQ86WB7 457 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 C12orf50Q8NA57 414 aaPredicted RBP10.39□□□□□ -0.75
VRK3-216ENST00000599342 CCDC150Q8NCX0 1101 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 TSTD1Q8NFU3 115 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 EZH1Q92800 747 aaPredicted RBP10.39□□□□□ -0.75
VRK3-216ENST00000599342 ELMO3Q96BJ8 720 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 DNAI2Q9GZS0 605 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 SDCBP2Q9H190 292 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 POLR3BQ9NW08 1133 aaPredicted RBP10.39□□□□□ -0.75
VRK3-216ENST00000599342 COMMD8Q9NX08 183 aa10.39□□□□□ -0.75
VRK3-216ENST00000599342 TBC1D14Q9P2M4 693 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms