RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 RPL7AP62424 266 aaKnown RBP11.9□□□□□ -0.5
VMP1-207ENST00000588131 OGDHQ02218 1023 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 ADCY1Q08828 1119 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 ZNF252P-AS1Q0IIN9 211 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 MESDQ14696 234 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 TAF5Q15542 800 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 IFI16Q16666 785 aaKnown RBP11.9□□□□□ -0.5
VMP1-207ENST00000588131 PTPROQ16827 1216 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 RAB41Q5JT25 222 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 FAM102AQ5T9C2 384 aaPredicted RBP11.9□□□□□ -0.5
VMP1-207ENST00000588131 SDHAF4Q5VUM1 108 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 SLFN11Q7Z7L1 901 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 SCUBE3Q8IX30 993 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 EMC1Q8N766 993 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 TRIM58Q8NG06 486 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 NDRG1Q92597 394 aaKnown RBP11.9□□□□□ -0.5
VMP1-207ENST00000588131 KHSRPQ92945 711 aaKnown RBP eCLIP11.9□□□□□ -0.5
VMP1-207ENST00000588131 FUBP3Q96I24 572 aaKnown RBP eCLIP11.9□□□□□ -0.5
VMP1-207ENST00000588131 UBXN6Q9BZV1 441 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 LRRC4Q9HBW1 653 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 MRPL47Q9HD33 250 aaKnown RBP11.9□□□□□ -0.5
VMP1-207ENST00000588131 MRPL17Q9NRX2 175 aaKnown RBP11.9□□□□□ -0.5
VMP1-207ENST00000588131 SLC27A5Q9Y2P5 690 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 RWDD3Q9Y3V2 267 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 HYOU1Q9Y4L1 999 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 PCDHA11Q9Y5I1 949 aa11.9□□□□□ -0.5
VMP1-207ENST00000588131 TMEM191CA6NGB0 347 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 SIGLEC16A6NMB1 481 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 C5orf67F2Z3F1 127 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 ENC1O14682 589 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 GRAP2O75791 330 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 SOAT2O75908 522 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 CSPG5O95196 566 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 TUBB4AP04350 444 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 ATP1A1P05023 1023 aaKnown RBP11.89□□□□□ -0.51
VMP1-207ENST00000588131 KRT3P12035 628 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 CASQ1P31415 396 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 RFC1P35251 1148 aaPredicted RBP11.89□□□□□ -0.51
VMP1-207ENST00000588131 GRIK1P39086 918 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 MAGEA11P43364 429 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 TKTL1P51854 596 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 ERVFC1P60507 584 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 SLC6A3Q01959 620 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 TAP1Q03518 808 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 DDR2Q16832 855 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 DNTTIP2Q5QJE6 756 aaKnown RBP11.89□□□□□ -0.51
VMP1-207ENST00000588131 TRNP1Q6NT89 227 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 C11orf63Q6NUN7 778 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 VSTM1Q6UX27 236 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 SCN4BQ8IWT1 228 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 STKLD1Q8NE28 680 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 SPPL3Q8TCT6 385 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 SPPL2BQ8TCT7 592 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 C8orf48Q96LL4 319 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 PLVAPQ9BX97 442 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 PBX4Q9BYU1 374 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 ULBP1Q9BZM6 244 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 RXFP1Q9HBX9 757 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 ABCB6Q9NP58 842 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 STK39Q9UEW8 545 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 TMEM59LQ9UK28 342 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 LZTS1Q9Y250 596 aa11.89□□□□□ -0.51
VMP1-207ENST00000588131 TNFRSF10BO14763 440 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 GRM6O15303 877 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 TEX28O15482 410 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 PROSCO94903 275 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 ABLIM3O94929 683 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 SEC24AO95486 1093 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 HAPLN1P10915 354 aaPredicted RBP11.88□□□□□ -0.51
VMP1-207ENST00000588131 CA8P35219 290 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 SNX16P57768 344 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 MRPS5P82675 430 aaKnown RBP11.88□□□□□ -0.51
VMP1-207ENST00000588131 SMARCB1Q12824 385 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 DUSP4Q13115 394 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 RAB33AQ14088 237 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 MGAT5BQ3V5L5 792 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 DCUN1D2Q6PH85 259 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 BHLHA9Q7RTU4 235 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 DAAM2Q86T65 1068 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 NT5DC3Q86UY8 548 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 ZDHHC17Q8IUH5 632 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 GPR65Q8IYL9 337 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 SYCE1Q8N0S2 351 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 SIX6OS1Q8N1H7 587 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 C2orf15Q8WU43 125 aaKnown RBP11.88□□□□□ -0.51
VMP1-207ENST00000588131 POF1BQ8WVV4 589 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 CALR3Q96L12 384 aaKnown RBP11.88□□□□□ -0.51
VMP1-207ENST00000588131 SEPT5Q99719 369 aaPredicted RBP11.88□□□□□ -0.51
VMP1-207ENST00000588131 NAPGQ99747 312 aaPredicted RBP11.88□□□□□ -0.51
VMP1-207ENST00000588131 TCF25Q9BQ70 676 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 NKX2-4Q9H2Z4 354 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 PNPLA8Q9NP80 782 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.88□□□□□ -0.51
VMP1-207ENST00000588131 FNIP2Q9P278 1114 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 AFF4Q9UHB7 1163 aaKnown RBP11.88□□□□□ -0.51
VMP1-207ENST00000588131 PACSIN2Q9UNF0 486 aaPredicted RBP11.88□□□□□ -0.51
VMP1-207ENST00000588131 ALG6Q9Y672 507 aa11.88□□□□□ -0.51
VMP1-207ENST00000588131 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.87□□□□□ -0.51
VMP1-207ENST00000588131 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.87□□□□□ -0.51
VMP1-207ENST00000588131 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms