RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 TMEM30AQ9NV96 361 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 HCFC1R1Q9NWW0 138 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 UXTQ9UBK9 157 aaPredicted RBP16.39■□□□□ 0.21
SS18-216ENST00000580751 CDH22Q9UJ99 828 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 ZKSCAN5Q9Y2L8 839 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 UNC80Q8N2C7 3258 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 DENND4AQ7Z401 1863 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 M0QYV0 167 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 RTN3O95197 1032 aaPredicted RBP16.38■□□□□ 0.21
SS18-216ENST00000580751 FSHRP23945 695 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 CLCN1P35523 988 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 PDE6CP51160 858 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 KCNQ1P51787 676 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 SLC47A2Q86VL8 602 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 VPS36Q86VN1 386 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 TTC30AQ86WT1 665 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 NUP93Q8N1F7 819 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 ZMIZ2Q8NF64 920 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 ZNF606Q8WXB4 792 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 ASB2Q96Q27 587 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 GCNAQ96QF7 691 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 ZSWIM1Q9BR11 485 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 UBXN6Q9BZV1 441 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 POMKQ9H5K3 350 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 KCND1Q9NSA2 647 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 COMMD8Q9NX08 183 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 MRPS23Q9Y3D9 190 aaKnown RBP16.38■□□□□ 0.21
SS18-216ENST00000580751 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.38■□□□□ 0.219e-6■■■■□ 20.1
SS18-216ENST00000580751 MYH10P35580 1976 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 PATJQ8NI35 1801 aa16.38■□□□□ 0.21
SS18-216ENST00000580751 XPO1O14980 1071 aaKnown RBP16.37■□□□□ 0.21
SS18-216ENST00000580751 CCP110O43303 1012 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 BEST1O76090 585 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 MICAL2O94851 1124 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 MYL4P12829 197 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 IL9P15248 144 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 CYP11B1P15538 503 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 HMGA1P17096 107 aaKnown RBP16.37■□□□□ 0.21
SS18-216ENST00000580751 CDC25CP30307 473 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 CYLC1P35663 651 aaPredicted RBP16.37■□□□□ 0.21
SS18-216ENST00000580751 SLC5A3P53794 718 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 NTHL1P78549 312 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 KLHL30Q0D2K2 578 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 MTMR3Q13615 1198 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 HGSNATQ68CP4 663 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 ZNF677Q86XU0 584 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 TMC8Q8IU68 726 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.37■□□□□ 0.21
SS18-216ENST00000580751 STKLD1Q8NE28 680 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 CCDC42Q96M95 316 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 TTLL2Q9BWV7 592 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 PHF7Q9BWX1 381 aaPredicted RBP16.37■□□□□ 0.21
SS18-216ENST00000580751 LRRC3Q9BY71 257 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 ACP6Q9NPH0 428 aa16.37■□□□□ 0.21
SS18-216ENST00000580751 MAGED2Q9UNF1 606 aaPredicted RBP16.37■□□□□ 0.21
SS18-216ENST00000580751 C5orf42Q9H799 3197 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 TNFRSF10BO14763 440 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 IPO7O95373 1038 aaKnown RBP16.36■□□□□ 0.21
SS18-216ENST00000580751 CALCAP01258 141 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 GABRR2P28476 465 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 PLA2G4AP47712 749 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 PDE4CQ08493 712 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 PKDCCQ504Y2 493 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 PRSS36Q5K4E3 855 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 GET4Q7L5D6 327 aaPredicted RBP16.36■□□□□ 0.21
SS18-216ENST00000580751 OTOP3Q7RTS5 596 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 PIGZQ86VD9 579 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 ZSCAN30Q86W11 494 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 HS6ST3Q8IZP7 471 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 TXLNBQ8N3L3 684 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 UBA3Q8TBC4 463 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 SLITRK1Q96PX8 696 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 FBXO44Q9H4M3 255 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 NHEJ1Q9H9Q4 299 aaPredicted RBP16.36■□□□□ 0.21
SS18-216ENST00000580751 ZNF334Q9HCZ1 680 aaPredicted RBP16.36■□□□□ 0.21
SS18-216ENST00000580751 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.36■□□□□ 0.21
SS18-216ENST00000580751 PRKAG3Q9UGI9 489 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 PCDHGC3Q9UN70 934 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 USTQ9Y2C2 406 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 CEP83Q9Y592 693 aa16.36■□□□□ 0.21
SS18-216ENST00000580751 EIF3CLB5ME19 914 aaKnown RBP16.35■□□□□ 0.21
SS18-216ENST00000580751 HHLA1C9JL84 531 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 LCA5LO95447 670 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 YWHAQP27348 245 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 USP46P62068 366 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 GOLGA8FQ08AF8 430 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 GOLGA8DPQ0D2H9 430 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 SLC5A9Q2M3M2 681 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 C10orf76Q5T2E6 689 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 PPP1R2P3Q6NXS1 205 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 PDZD8Q8NEN9 1154 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 EPS8L1Q8TE68 723 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 SECISBP2LQ93073 1101 aaKnown RBP16.35■□□□□ 0.21
SS18-216ENST00000580751 ACSF2Q96CM8 615 aaPredicted RBP16.35■□□□□ 0.21
SS18-216ENST00000580751 EIF3CQ99613 913 aaKnown RBP16.35■□□□□ 0.21
SS18-216ENST00000580751 PDCL3Q9H2J4 239 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 DEF6Q9H4E7 631 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 IL21Q9HBE4 155 aa16.35■□□□□ 0.21
SS18-216ENST00000580751 LUC7LQ9NQ29 371 aaKnown RBP16.35■□□□□ 0.21
SS18-216ENST00000580751 ARHGAP20Q9P2F6 1191 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms