RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TNK2Q07912 1038 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 CC2D1AQ6P1N0 951 aaPredicted RBP25.33■■□□□ 1.65
SHMT1-206ENST00000579558 TTC39CQ8N584 583 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 TTC16Q8NEE8 873 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 RIN3Q8TB24 985 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 TATDN2Q93075 761 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 FBXO32Q969P5 355 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 PHOX2BQ99453 314 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 SMOQ99835 787 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 CACNA1HO95180 2353 aa25.33■■□□□ 1.65
SHMT1-206ENST00000579558 TNFRSF10BO14763 440 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 FAM200BP0CF97 657 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 PFKLP17858 780 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 MAGEA9P43362 315 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 MAP3K7CLP57077 242 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 ZNF394Q53GI3 561 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 ALYREFQ86V81 257 aaKnown RBP25.32■■□□□ 1.64
SHMT1-206ENST00000579558 ZMIZ2Q8NF64 920 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 SCAMP5Q8TAC9 235 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 CLDN23Q96B33 292 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 CYFIP2Q96F07 1278 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 HNRNPABQ99729 332 aaKnown RBP25.32■■□□□ 1.64
SHMT1-206ENST00000579558 ARID3AQ99856 593 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 CSNK1G1Q9HCP0 422 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 CISHQ9NSE2 258 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 F5P12259 2224 aa25.32■■□□□ 1.64
SHMT1-206ENST00000579558 HELZP42694 1942 aaKnown RBP25.31■■□□□ 1.64
SHMT1-206ENST00000579558 SPECC1L-ADORA2AF8WAN1 911 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 BEST1O76090 585 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 FMO5P49326 533 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 USP4Q13107 963 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 MTF1Q14872 753 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 ZNF77Q15935 545 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 ITPRIPL2Q3MIP1 535 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 C1orf228Q6PIY5 440 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 C1orf210Q8IVY1 113 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 PDZD8Q8NEN9 1154 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 OVCA2Q8WZ82 227 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 FAM83CQ9BQN1 747 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 SPATA6Q9NWH7 488 aaPredicted RBP25.31■■□□□ 1.64
SHMT1-206ENST00000579558 ARHGAP26Q9UNA1 814 aa25.31■■□□□ 1.64
SHMT1-206ENST00000579558 CTHP32929 405 aa25.3■■□□□ 1.64
SHMT1-206ENST00000579558 RPS9P46781 194 aaKnown RBP25.3■■□□□ 1.64
SHMT1-206ENST00000579558 TRIM68Q6AZZ1 485 aa25.3■■□□□ 1.64
SHMT1-206ENST00000579558 CLEC17AQ6ZS10 378 aa25.3■■□□□ 1.64
SHMT1-206ENST00000579558 RALGPS2Q86X27 583 aaPredicted RBP25.3■■□□□ 1.64
SHMT1-206ENST00000579558 ZNF687Q8N1G0 1237 aa25.3■■□□□ 1.64
SHMT1-206ENST00000579558 SH3RF2Q8TEC5 729 aa25.3■■□□□ 1.64
SHMT1-206ENST00000579558 SRRTQ9BXP5 876 aaKnown RBP25.3■■□□□ 1.64
SHMT1-206ENST00000579558 CLSTN2Q9H4D0 955 aa25.3■■□□□ 1.64
SHMT1-206ENST00000579558 EBF3Q9H4W6 596 aa25.3■■□□□ 1.64
SHMT1-206ENST00000579558 FAM124BQ9H5Z6 455 aaPredicted RBP25.3■■□□□ 1.64
SHMT1-206ENST00000579558 HPS4Q9NQG7 708 aa25.3■■□□□ 1.64
SHMT1-206ENST00000579558 COMMD8Q9NX08 183 aa25.3■■□□□ 1.64
SHMT1-206ENST00000579558 IL37Q9NZH6 218 aa25.3■■□□□ 1.64
SHMT1-206ENST00000579558 GNA14O95837 355 aa25.29■■□□□ 1.64
SHMT1-206ENST00000579558 FZD5Q13467 585 aa25.29■■□□□ 1.64
SHMT1-206ENST00000579558 CUL2Q13617 745 aa25.29■■□□□ 1.64
SHMT1-206ENST00000579558 RUNX3Q13761 415 aa25.29■■□□□ 1.64
SHMT1-206ENST00000579558 PDGFRLQ15198 375 aa25.29■■□□□ 1.64
SHMT1-206ENST00000579558 CLEC20AQ6ZU45 233 aa25.29■■□□□ 1.64
SHMT1-206ENST00000579558 HEXIM2Q96MH2 286 aaKnown RBP25.29■■□□□ 1.64
SHMT1-206ENST00000579558 PATJQ8NI35 1801 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 FGFR1OPO95684 399 aaKnown RBP25.28■■□□□ 1.64
SHMT1-206ENST00000579558 OAS1P00973 400 aaKnown RBP25.28■■□□□ 1.64
SHMT1-206ENST00000579558 ARSAP15289 507 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 TCF3P15923 654 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 LRMPQ12912 555 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 PPP1R26Q5T8A7 1209 aaPredicted RBP25.28■■□□□ 1.64
SHMT1-206ENST00000579558 TXNDC11Q6PKC3 985 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 SLC4A11Q8NBS3 891 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 JAKMIP2Q96AA8 810 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 TMEM176AQ96HP8 235 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 RNF38Q9H0F5 515 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 LMAN1LQ9HAT1 526 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 DUS2Q9NX74 493 aaKnown RBP25.28■■□□□ 1.64
SHMT1-206ENST00000579558 GMIPQ9P107 970 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 CHORDC1Q9UHD1 332 aaPredicted RBP25.28■■□□□ 1.64
SHMT1-206ENST00000579558 RWDD2AQ9UIY3 292 aa25.28■■□□□ 1.64
SHMT1-206ENST00000579558 PMM2O15305 246 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 OLFM2O95897 454 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 IFNAR2P48551 515 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 MRE11P49959 708 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 RAD23BP54727 409 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 YWHAEP62258 255 aaKnown RBP25.27■■□□□ 1.64
SHMT1-206ENST00000579558 SLC7A9P82251 487 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 CETN1Q12798 172 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 TRIM59Q8IWR1 403 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 OSCP1Q8WVF1 389 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 FBXO44Q9H4M3 255 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 CPQQ9Y646 472 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 WNT6Q9Y6F9 365 aa25.27■■□□□ 1.64
SHMT1-206ENST00000579558 FAM92AA1XBS5 289 aa25.26■■□□□ 1.63
SHMT1-206ENST00000579558 LEFTY2O00292 366 aa25.26■■□□□ 1.63
SHMT1-206ENST00000579558 LAMTOR5O43504 91 aa25.26■■□□□ 1.63
SHMT1-206ENST00000579558 TBXAS1P24557 533 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-206ENST00000579558 MARSP56192 900 aaKnown RBP25.26■■□□□ 1.63
SHMT1-206ENST00000579558 GPRIN1Q7Z2K8 1008 aa25.26■■□□□ 1.63
SHMT1-206ENST00000579558 NT5C1BQ96P26 610 aa25.26■■□□□ 1.63
SHMT1-206ENST00000579558 CHRDQ9H2X0 955 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms