RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 TTC8Q8TAM2 541 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 DNASE1L2Q92874 299 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 USP13Q92995 863 aaPredicted RBP20.62■□□□□ 0.89
SS18-209ENST00000578595 CYP2S1Q96SQ9 504 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 FAM124BQ9H5Z6 455 aaPredicted RBP20.62■□□□□ 0.89
SS18-209ENST00000578595 CCL26Q9Y258 94 aa20.62■□□□□ 0.89
SS18-209ENST00000578595 PMM2O15305 246 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 NPR3P17342 541 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 HDCP19113 662 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 AVPR2P30518 371 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 SLC8A3P57103 927 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 GOLGA7BQ2TAP0 167 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 ARHGAP29Q52LW3 1261 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 ARHGEF19Q8IW93 802 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 ZMIZ2Q8NF64 920 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 KAT5Q92993 513 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 SLC22A12Q96S37 553 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 FOXQ1Q9C009 403 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 NACA2Q9H009 215 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 ANO10Q9NW15 660 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 OBP2AQ9NY56 170 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 HESX1Q9UBX0 185 aa20.61■□□□□ 0.89
SS18-209ENST00000578595 KCNJ18B7U540 433 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 CHADO15335 359 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 KRT5P13647 590 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 ACO1P21399 889 aaKnown RBP20.6■□□□□ 0.89
SS18-209ENST00000578595 CD72P21854 359 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 PPP3CCP48454 512 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 KPNA1P52294 538 aaPredicted RBP20.6■□□□□ 0.89
SS18-209ENST00000578595 PRKCQQ04759 706 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 KCNJ12Q14500 433 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 MAN2A1Q16706 1144 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 CAVIN1Q6NZI2 390 aaKnown RBP20.6■□□□□ 0.89
SS18-209ENST00000578595 GBP6Q6ZN66 633 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 FBXO44Q9H4M3 255 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 GMIPQ9P107 970 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 CHORDC1Q9UHD1 332 aaPredicted RBP20.6■□□□□ 0.89
SS18-209ENST00000578595 NFE2L3Q9Y4A8 694 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 PIAS3Q9Y6X2 628 aa20.6■□□□□ 0.89
SS18-209ENST00000578595 MYOFQ9NZM1 2061 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 ZNF840PA6NDX5 716 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 SOBPA7XYQ1 873 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 MBL2P11226 248 aaPredicted RBP20.59■□□□□ 0.89
SS18-209ENST00000578595 AOC1P19801 751 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 WEE1P30291 646 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 CLCN5P51795 746 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 FCHO2Q0JRZ9 810 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 RBM43Q6ZSC3 357 aaKnown RBP20.59■□□□□ 0.89
SS18-209ENST00000578595 GPRIN1Q7Z2K8 1008 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 IRF2BP1Q8IU81 584 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 TMEM105Q8N8V8 129 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 RBBP8NLQ8NC74 664 aaPredicted RBP20.59■□□□□ 0.89
SS18-209ENST00000578595 LMO3Q8TAP4 145 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 LRRC3BQ96PB8 259 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 DUSP16Q9BY84 665 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 CSNK1G1Q9HCP0 422 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 UBE2TQ9NPD8 197 aaPredicted RBP20.59■□□□□ 0.89
SS18-209ENST00000578595 SAMSN1Q9NSI8 373 aaKnown RBP20.59■□□□□ 0.89
SS18-209ENST00000578595 SMPD4Q9NXE4 827 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 TSPAN16Q9UKR8 245 aa20.59■□□□□ 0.89
SS18-209ENST00000578595 NDRG2Q9UN36 371 aaKnown RBP20.59■□□□□ 0.89
SS18-209ENST00000578595 ATG2BQ96BY7 2078 aa20.58■□□□□ 0.89
SS18-209ENST00000578595 TNFRSF10BO14763 440 aa20.58■□□□□ 0.89
SS18-209ENST00000578595 PLCB2Q00722 1185 aa20.58■□□□□ 0.89
SS18-209ENST00000578595 EXOC3L4Q17RC7 722 aa20.58■□□□□ 0.89
SS18-209ENST00000578595 CT47A1Q5JQC4 288 aaPredicted RBP20.58■□□□□ 0.89
SS18-209ENST00000578595 ARHGAP17Q68EM7 881 aa20.58■□□□□ 0.89
SS18-209ENST00000578595 C11orf57Q6ZUT1 292 aaPredicted RBP20.58■□□□□ 0.89
SS18-209ENST00000578595 SH3RF2Q8TEC5 729 aa20.58■□□□□ 0.89
SS18-209ENST00000578595 OVCA2Q8WZ82 227 aa20.58■□□□□ 0.89
SS18-209ENST00000578595 TUBGCP2Q9BSJ2 902 aa20.58■□□□□ 0.89
SS18-209ENST00000578595 TLR8Q9NR97 1041 aaKnown RBP20.58■□□□□ 0.89
SS18-209ENST00000578595 COMMD8Q9NX08 183 aa20.58■□□□□ 0.89
SS18-209ENST00000578595 TMEM63CQ9P1W3 806 aa20.58■□□□□ 0.89
SS18-209ENST00000578595 KANSL1LA0AUZ9 987 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 CYP26A1O43174 497 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 PI15O43692 258 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 DCNP07585 359 aaKnown RBP20.57■□□□□ 0.88
SS18-209ENST00000578595 TPM2P07951 284 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 VDRP11473 427 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 USP8P40818 1118 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 IFNAR2P48551 515 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 BCAT1P54687 386 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 GCNT1Q02742 428 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 MTF1Q14872 753 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 ARHGAP44Q17R89 818 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 PHLDB3Q6NSJ2 640 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 TRIM65Q6PJ69 517 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 ZNF852Q6ZMS4 543 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 UBR7Q8N806 425 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 NDST4Q9H3R1 872 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 GKN1Q9NS71 199 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 GTSE1Q9NYZ3 720 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 MRPS17Q9Y2R5 130 aaKnown RBP20.57■□□□□ 0.88
SS18-209ENST00000578595 SIT1Q9Y3P8 196 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 CPQQ9Y646 472 aa20.57■□□□□ 0.88
SS18-209ENST00000578595 PAEPP09466 180 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 SLC9A1P19634 815 aa20.56■□□□□ 0.88
SS18-209ENST00000578595 BRD2P25440 801 aaKnown RBP20.56■□□□□ 0.88
SS18-209ENST00000578595 SOX9P48436 509 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms