RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 ZNF268Q14587 947 aaPredicted RBP16.14■□□□□ 0.17
SMG6-220ENST00000576218 DPCR1Q3MIW9 517 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 PPP1R26Q5T8A7 1209 aaPredicted RBP16.14■□□□□ 0.17
SMG6-220ENST00000576218 PAQR9Q6ZVX9 377 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 TRIM59Q8IWR1 403 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 SCAMP5Q8TAC9 235 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 OVCA2Q8WZ82 227 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 FAM3CQ92520 227 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 NELL2Q99435 816 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 SMOQ99835 787 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 IRF2BPLQ9H1B7 796 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 LTB4R2Q9NPC1 389 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 TRPV5Q9NQA5 729 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 TMEM30AQ9NV96 361 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 GCNT4Q9P109 453 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 HESX1Q9UBX0 185 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 ARIH1Q9Y4X5 557 aaPredicted RBP16.14■□□□□ 0.17
SMG6-220ENST00000576218 PCDHB4Q9Y5E5 795 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 KMT2EQ8IZD2 1858 aa16.14■□□□□ 0.17
SMG6-220ENST00000576218 ZNF840PA6NDX5 716 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 MBL2P11226 248 aaPredicted RBP16.13■□□□□ 0.17
SMG6-220ENST00000576218 PFKLP17858 780 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 ACO1P21399 889 aaKnown RBP16.13■□□□□ 0.17
SMG6-220ENST00000576218 MARSP56192 900 aaKnown RBP16.13■□□□□ 0.17
SMG6-220ENST00000576218 MTF1Q14872 753 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 ITPRIPL2Q3MIP1 535 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 SGO2Q562F6 1265 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 C1orf228Q6PIY5 440 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 TMEM270Q6UE05 265 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 SASS6Q6UVJ0 657 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 CLEC20AQ6ZU45 233 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 CCDC105Q8IYK2 499 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 DTWD2Q8NBA8 298 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 SLC4A11Q8NBS3 891 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 PRSS33Q8NF86 280 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 SH3RF2Q8TEC5 729 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 WHAMMQ8TF30 809 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 MSANTD3Q96H12 275 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 C8orf33Q9H7E9 229 aaPredicted RBP16.13■□□□□ 0.17
SMG6-220ENST00000576218 GKN1Q9NS71 199 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 COMMD8Q9NX08 183 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 GTSE1Q9NYZ3 720 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 GMIPQ9P107 970 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 ZNF318Q5VUA4 2279 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 MYH10P35580 1976 aa16.13■□□□□ 0.17
SMG6-220ENST00000576218 ZNF638Q14966 1978 aaKnown RBP16.13■□□□□ 0.17
SMG6-220ENST00000576218 BEST1O76090 585 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 GLULP15104 373 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 ERCC5P28715 1186 aaPredicted RBP16.12■□□□□ 0.17
SMG6-220ENST00000576218 RAD23BP54727 409 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 PDGFRLQ15198 375 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 GOLGA7BQ2TAP0 167 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 HECTD3Q5T447 861 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 RRAGAQ7L523 313 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 ZMIZ2Q8NF64 920 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 GPT2Q8TD30 523 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 ATOH1Q92858 354 aaPredicted RBP16.12■□□□□ 0.17
SMG6-220ENST00000576218 SLC22A12Q96S37 553 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 INTS2Q9H0H0 1204 aaKnown RBP16.12■□□□□ 0.17
SMG6-220ENST00000576218 EBF3Q9H4W6 596 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 THAP9Q9H5L6 903 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 CSNK1G1Q9HCP0 422 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 TLR8Q9NR97 1041 aaKnown RBP16.12■□□□□ 0.17
SMG6-220ENST00000576218 DUS2Q9NX74 493 aaKnown RBP16.12■□□□□ 0.17
SMG6-220ENST00000576218 SMPD4Q9NXE4 827 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 CHORDC1Q9UHD1 332 aaPredicted RBP16.12■□□□□ 0.17
SMG6-220ENST00000576218 ARHGAP26Q9UNA1 814 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 OBSL1O75147 1896 aa16.12■□□□□ 0.17
SMG6-220ENST00000576218 TICRRQ7Z2Z1 1910 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 H0Y858 1186 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 PMM2O15305 246 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 KRT5P13647 590 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 PRKCSHP14314 528 aaPredicted RBP16.11■□□□□ 0.17
SMG6-220ENST00000576218 TARSP26639 723 aaKnown RBP16.11■□□□□ 0.17
SMG6-220ENST00000576218 PLA2G5P39877 138 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 SOX9P48436 509 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 AMPD2Q01433 879 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 TNK2Q07912 1038 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 HSP90AA4PQ58FG1 418 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 TRIM68Q6AZZ1 485 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 DDX42Q86XP3 938 aaKnown RBP eCLIP16.11■□□□□ 0.17
SMG6-220ENST00000576218 CPA6Q8N4T0 437 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 EHBP1Q8NDI1 1231 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 EXOC4Q96A65 974 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 LRRC3BQ96PB8 259 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 DDX23Q9BUQ8 820 aaKnown RBP16.11■□□□□ 0.17
SMG6-220ENST00000576218 DUSP16Q9BY84 665 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 PNPLA8Q9NP80 782 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 SPATA6Q9NWH7 488 aaPredicted RBP16.11■□□□□ 0.17
SMG6-220ENST00000576218 CPQQ9Y646 472 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 MUC6Q6W4X9 2439 aa16.11■□□□□ 0.17
SMG6-220ENST00000576218 SPECC1L-ADORA2AF8WAN1 911 aa16.1■□□□□ 0.17
SMG6-220ENST00000576218 LEFTY2O00292 366 aa16.1■□□□□ 0.17
SMG6-220ENST00000576218 TNFRSF10BO14763 440 aa16.1■□□□□ 0.17
SMG6-220ENST00000576218 TPM2P07951 284 aa16.1■□□□□ 0.17
SMG6-220ENST00000576218 VDRP11473 427 aa16.1■□□□□ 0.17
SMG6-220ENST00000576218 MAGEA9P43362 315 aa16.1■□□□□ 0.17
SMG6-220ENST00000576218 BCAT1P54687 386 aa16.1■□□□□ 0.17
SMG6-220ENST00000576218 USP4Q13107 963 aa16.1■□□□□ 0.17
SMG6-220ENST00000576218 RUNX3Q13761 415 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms