RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 FNBP1LQ5T0N5 605 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 SH3PXD2AQ5TCZ1 1133 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 OR6B2Q6IFH4 312 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 CAPN12Q6ZSI9 719 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 FAM183BPQ6ZVS7 135 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 ZNF410Q86VK4 478 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 SPATA18Q8TC71 538 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 DENND1AQ8TEH3 1009 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 KIF12Q96FN5 646 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 PIWIL1Q96J94 861 aaKnown RBP10.55□□□□□ -0.72
VPS53-220ENST00000576149 TRABDQ9H4I3 376 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 KLC4Q9NSK0 619 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 ABCF3Q9NUQ8 709 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.55□□□□□ -0.72
VPS53-220ENST00000576149 FETUBQ9UGM5 382 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 RABGEF1Q9UJ41 708 aa10.55□□□□□ -0.72
VPS53-220ENST00000576149 STRNO43815 780 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 ASMTLO95671 621 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 HOXD8P13378 290 aaPredicted RBP10.54□□□□□ -0.72
VPS53-220ENST00000576149 KRT15P19012 456 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 TAC1P20366 129 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 CDH6P55285 790 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 IL9RQ01113 521 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 MMRN1Q13201 1228 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 DPY19L2Q6NUT2 758 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 SPATA21Q7Z572 469 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 FUKQ8N0W3 1084 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 C12orf29Q8N999 325 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 FAM71DQ8N9W8 422 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 ATP11CQ8NB49 1132 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 PYROXD1Q8WU10 500 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 GBA2Q9HCG7 927 aaPredicted RBP10.54□□□□□ -0.72
VPS53-220ENST00000576149 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.54□□□□□ -0.72
VPS53-220ENST00000576149 PSMC3IPQ9P2W1 217 aaPredicted RBP10.54□□□□□ -0.72
VPS53-220ENST00000576149 PRKAG3Q9UGI9 489 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 SMG5Q9UPR3 1016 aaKnown RBP10.54□□□□□ -0.72
VPS53-220ENST00000576149 TCRBV7S3A2A0A539 114 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 PDHXO00330 501 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 PIK3R2O00459 728 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 SPAG7O75391 227 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 TMEM63AO94886 807 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 STIP1P31948 543 aaKnown RBP10.54□□□□□ -0.72
VPS53-220ENST00000576149 FOXN2P32314 431 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 PHBP35232 272 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 GEMIN4P57678 1058 aaKnown RBP10.54□□□□□ -0.72
VPS53-220ENST00000576149 TFDP2Q14188 446 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 DPYSL3Q14195 570 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 NOMO1Q15155 1222 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 C15orf59Q2T9L4 293 aaPredicted RBP10.54□□□□□ -0.72
VPS53-220ENST00000576149 RAB6CQ53S08 254 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 CGB2Q6NT52 195 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 SMC6Q96SB8 1091 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 WDR83Q9BRX9 315 aaKnown RBP10.54□□□□□ -0.72
VPS53-220ENST00000576149 MAK16Q9BXY0 300 aaKnown RBP10.54□□□□□ -0.72
VPS53-220ENST00000576149 RAB6CQ9H0N0 254 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 KIF9Q9HAQ2 790 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 PLEKHA5Q9HAU0 1116 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 HAUS2Q9NVX0 235 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 SLC45A1Q9Y2W3 748 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 ARL2BPQ9Y2Y0 163 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 DERAQ9Y315 318 aa10.54□□□□□ -0.72
VPS53-220ENST00000576149 PRPSAP2O60256 369 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 MMP3P08254 477 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 SMPD1P17405 629 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 SSTR1P30872 391 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 MTFR1Q15390 333 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 ZKSCAN8Q15776 578 aaPredicted RBP10.53□□□□□ -0.72
VPS53-220ENST00000576149 GOLGA7BQ2TAP0 167 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 DCAF4L1Q3SXM0 396 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 GALNTL6Q49A17 601 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 CCDC14Q49A88 953 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 PKDCCQ504Y2 493 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 FAM47CQ5HY64 1035 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 C3orf62Q6ZUJ4 267 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 PDIK1LQ8N165 341 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 GRAMD1AQ96CP6 724 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 CXCL16Q9H2A7 254 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 XPO7Q9UIA9 1087 aaKnown RBP10.53□□□□□ -0.72
VPS53-220ENST00000576149 PLXNA1Q9UIW2 1896 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.53□□□□□ -0.72
VPS53-220ENST00000576149 DPYSL4O14531 572 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 TYROBPO43914 113 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 GRAP2O75791 330 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 NPTXRO95502 500 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 TSHRP16473 764 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 HOXA11P31270 313 aaPredicted RBP10.53□□□□□ -0.72
VPS53-220ENST00000576149 RGS7P49802 495 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 ROR1Q01973 937 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 SPARCL1Q14515 664 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 KIZQ2M2Z5 673 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 DUSP28Q4G0W2 176 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 BOLA3Q53S33 107 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 PPP1R26Q5T8A7 1209 aaPredicted RBP10.53□□□□□ -0.72
VPS53-220ENST00000576149 PMF1Q6P1K2 205 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 CYB5D1Q6P9G0 228 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 DARS2Q6PI48 645 aaKnown RBP10.53□□□□□ -0.72
VPS53-220ENST00000576149 OLFML1Q6UWY5 402 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 NPNTQ6UXI9 565 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 RGS9BPQ6ZS82 235 aa10.53□□□□□ -0.72
VPS53-220ENST00000576149 TTC30AQ86WT1 665 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms