RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ASAH2Q9NR71 780 aa18.02■□□□□ 0.48
NUP88-210ENST00000574867 TULP2O00295 520 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 FGF19O95750 216 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 CYP1A1P04798 512 aaPredicted RBP18.02■□□□□ 0.47
NUP88-210ENST00000574867 HMGA1P17096 107 aaKnown RBP18.02■□□□□ 0.47
NUP88-210ENST00000574867 KCNA5P22460 613 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 ACADSBP45954 432 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 RPL34P49207 117 aaKnown RBP18.02■□□□□ 0.47
NUP88-210ENST00000574867 SNX16P57768 344 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 NOMO3P69849 1222 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 CDK17Q00537 523 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 GOLGA8FQ08AF8 430 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 GOLGA8DPQ0D2H9 430 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 PPP1R2P3Q6NXS1 205 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 PMF1Q6P1K2 205 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 ZNF571Q7Z3V5 609 aaPredicted RBP18.02■□□□□ 0.47
NUP88-210ENST00000574867 MSANTD4Q8NCY6 345 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 RIPOR3Q96MK2 946 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 PANX2Q96RD6 677 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 LRRC4Q9HBW1 653 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 SEPT11Q9NVA2 429 aaKnown RBP18.02■□□□□ 0.47
NUP88-210ENST00000574867 IL37Q9NZH6 218 aa18.02■□□□□ 0.47
NUP88-210ENST00000574867 BRWD1Q9NSI6 2320 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 MYO16Q9Y6X6 1858 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 SKILP12757 684 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 TNFAIP3P21580 790 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 KIF11P52732 1056 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 EPHA5P54756 1037 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 GSDMDP57764 484 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 WDR59Q6PJI9 974 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 GPRIN1Q7Z2K8 1008 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 IPO4Q8TEX9 1081 aaKnown RBP18.01■□□□□ 0.47
NUP88-210ENST00000574867 CORO1BQ9BR76 489 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 AVENQ9NQS1 362 aaPredicted RBP18.01■□□□□ 0.47
NUP88-210ENST00000574867 MAGED2Q9UNF1 606 aaPredicted RBP18.01■□□□□ 0.47
NUP88-210ENST00000574867 REV3LO60673 3130 aa18.01■□□□□ 0.47
NUP88-210ENST00000574867 SSU72P8A0A1W2PR75 194 aa18■□□□□ 0.47
NUP88-210ENST00000574867 FAM92AA1XBS5 289 aa18■□□□□ 0.47
NUP88-210ENST00000574867 YWHAQP27348 245 aa18■□□□□ 0.47
NUP88-210ENST00000574867 MTHFRP42898 656 aa18■□□□□ 0.47
NUP88-210ENST00000574867 MTMR3Q13615 1198 aa18■□□□□ 0.47
NUP88-210ENST00000574867 CLEC16AQ2KHT3 1053 aa18■□□□□ 0.47
NUP88-210ENST00000574867 PABPC1LQ4VXU2 614 aaKnown RBP18■□□□□ 0.47
NUP88-210ENST00000574867 ATAT1Q5SQI0 421 aa18■□□□□ 0.47
NUP88-210ENST00000574867 TMC8Q8IU68 726 aa18■□□□□ 0.47
NUP88-210ENST00000574867 SIX6OS1Q8N1H7 587 aa18■□□□□ 0.47
NUP88-210ENST00000574867 WDTC1Q8N5D0 677 aa18■□□□□ 0.47
NUP88-210ENST00000574867 STKLD1Q8NE28 680 aa18■□□□□ 0.47
NUP88-210ENST00000574867 SLITRK1Q96PX8 696 aa18■□□□□ 0.47
NUP88-210ENST00000574867 APOL5Q9BWW9 433 aa18■□□□□ 0.47
NUP88-210ENST00000574867 SLC4A5Q9BY07 1137 aa18■□□□□ 0.47
NUP88-210ENST00000574867 ST7Q9NRC1 585 aa18■□□□□ 0.47
NUP88-210ENST00000574867 ARHGAP20Q9P2F6 1191 aa18■□□□□ 0.47
NUP88-210ENST00000574867 DNMT3BQ9UBC3 853 aaKnown RBP18■□□□□ 0.47
NUP88-210ENST00000574867 CYTH4Q9UIA0 394 aa18■□□□□ 0.47
NUP88-210ENST00000574867 ZNF638Q14966 1978 aaKnown RBP18■□□□□ 0.47
NUP88-210ENST00000574867 H3BQ06 376 aaPredicted RBP18■□□□□ 0.47
NUP88-210ENST00000574867 RHOP08100 348 aa18■□□□□ 0.47
NUP88-210ENST00000574867 TKTL1P51854 596 aa18■□□□□ 0.47
NUP88-210ENST00000574867 USP46P62068 366 aa18■□□□□ 0.47
NUP88-210ENST00000574867 CENPCQ03188 943 aa18■□□□□ 0.47
NUP88-210ENST00000574867 MAPK8IP2Q13387 824 aaPredicted RBP18■□□□□ 0.47
NUP88-210ENST00000574867 SMAD4Q13485 552 aaKnown RBP18■□□□□ 0.47
NUP88-210ENST00000574867 CYP4A22Q5TCH4 519 aa18■□□□□ 0.47
NUP88-210ENST00000574867 NAA35Q5VZE5 725 aa18■□□□□ 0.47
NUP88-210ENST00000574867 PDZD4Q76G19 769 aaPredicted RBP18■□□□□ 0.47
NUP88-210ENST00000574867 GRASPQ7Z6J2 395 aaPredicted RBP18■□□□□ 0.47
NUP88-210ENST00000574867 SCML4Q8N228 414 aa18■□□□□ 0.47
NUP88-210ENST00000574867 PDZD8Q8NEN9 1154 aa18■□□□□ 0.47
NUP88-210ENST00000574867 SCAMP5Q8TAC9 235 aa18■□□□□ 0.47
NUP88-210ENST00000574867 OLIG1Q8TAK6 271 aa18■□□□□ 0.47
NUP88-210ENST00000574867 OVCA2Q8WZ82 227 aa18■□□□□ 0.47
NUP88-210ENST00000574867 PPP1R13BQ96KQ4 1090 aa18■□□□□ 0.47
NUP88-210ENST00000574867 NECTIN4Q96NY8 510 aa18■□□□□ 0.47
NUP88-210ENST00000574867 LRRC3Q9BY71 257 aa18■□□□□ 0.47
NUP88-210ENST00000574867 MIS12Q9H081 205 aa18■□□□□ 0.47
NUP88-210ENST00000574867 HCFC1R1Q9NWW0 138 aa18■□□□□ 0.47
NUP88-210ENST00000574867 USP3Q9Y6I4 520 aa18■□□□□ 0.47
NUP88-210ENST00000574867 NCANO14594 1321 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 DENND4AQ7Z401 1863 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 FBXO21O94952 628 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 UNGP13051 313 aaPredicted RBP17.99■□□□□ 0.47
NUP88-210ENST00000574867 CDC25CP30307 473 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 NSFP46459 744 aaKnown RBP17.99■□□□□ 0.47
NUP88-210ENST00000574867 RGS7P49802 495 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 ADIGQ0VDE8 80 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 IFRD2Q12894 506 aaPredicted RBP17.99■□□□□ 0.47
NUP88-210ENST00000574867 CCDC186Q7Z3E2 898 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 TMEM110Q86TL2 294 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 FBXO32Q969P5 355 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 GCNAQ96QF7 691 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 PCDHB18PQ96TA0 734 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 ZNF334Q9HCZ1 680 aaPredicted RBP17.99■□□□□ 0.47
NUP88-210ENST00000574867 CNGB3Q9NQW8 809 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 SCML2Q9UQR0 700 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 ZNF197O14709 1029 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 PLEKP08567 350 aaPredicted RBP17.99■□□□□ 0.47
NUP88-210ENST00000574867 PPP3CCP48454 512 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 CLUL1Q15846 466 aa17.99■□□□□ 0.47
NUP88-210ENST00000574867 CPXM1Q96SM3 734 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms