RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 CCDC127Q96BQ5 260 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 ZSWIM3Q96MP5 696 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 ASB16Q96NS5 453 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 SEPT5Q99719 369 aaPredicted RBP7.97□□□□□ -1.13
NUP88-205ENST00000572809 ATXN3LQ9H3M9 355 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 ARHGEF3Q9NR81 526 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 SIX4Q9UIU6 781 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 L1RE1Q9UN81 338 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 SIT1Q9Y3P8 196 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 PCDHB5Q9Y5E4 795 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 TRIOO75962 3097 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 PTPRJQ12913 1337 aa7.97□□□□□ -1.13
NUP88-205ENST00000572809 ZNF318Q5VUA4 2279 aa7.96□□□□□ -1.13
NUP88-205ENST00000572809 GOLGA6L4A6NEF3 574 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 PDXKO00764 312 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 GABRDO14764 452 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 KIF20AO95235 890 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 GABRR2P28476 465 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 GPC1P35052 558 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 VIPR2P41587 438 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 STARD6P59095 220 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 PRKCQQ04759 706 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 CYP24A1Q07973 514 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 TRPC3Q13507 836 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 VEPH1Q14D04 833 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 SOWAHAQ2M3V2 549 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 COX20Q5RI15 118 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 KRBA2Q6ZNG9 492 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 GAREM2Q75VX8 874 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 OSTM1Q86WC4 334 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 TMC8Q8IU68 726 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 ADGRF2Q8IZF7 708 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 DTWD2Q8NBA8 298 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 KIAA0895Q8NCT3 520 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 SHKBP1Q8TBC3 707 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 ZSCAN18Q8TBC5 510 aaPredicted RBP7.96□□□□□ -1.14
NUP88-205ENST00000572809 GIPC2Q8TF65 315 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 TMEM174Q8WUU8 243 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 ATOH1Q92858 354 aaPredicted RBP7.96□□□□□ -1.14
NUP88-205ENST00000572809 E2F7Q96AV8 911 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 MYO19Q96H55 970 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 CITED4Q96RK1 184 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 MMS19Q96T76 1030 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 CGRRF1Q99675 332 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 LPIN3Q9BQK8 851 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 PI4K2AQ9BTU6 479 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 TRMT61BQ9BVS5 477 aaKnown RBP7.96□□□□□ -1.14
NUP88-205ENST00000572809 SAP130Q9H0E3 1048 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 GOLPH3LQ9H4A5 285 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 SLITRK6Q9H5Y7 841 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 TBC1D17Q9HA65 648 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 TRPV4Q9HBA0 871 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 ZNF334Q9HCZ1 680 aaPredicted RBP7.96□□□□□ -1.14
NUP88-205ENST00000572809 TMLHEQ9NVH6 421 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 DMAC2Q9NW81 257 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 ABI2Q9NYB9 513 aaPredicted RBP7.96□□□□□ -1.14
NUP88-205ENST00000572809 GTF3C4Q9UKN8 822 aa7.96□□□□□ -1.14
NUP88-205ENST00000572809 ZDBF2Q9HCK1 2354 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 KRTAP9-6A0A140TA67 174 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 KANSL1LA0AUZ9 987 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 MYBPHLA2RUH7 354 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 CALUO43852 315 aaPredicted RBP7.95□□□□□ -1.14
NUP88-205ENST00000572809 PHACTR2O75167 634 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 RHOBTB3O94955 611 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 DCNP07585 359 aaKnown RBP7.95□□□□□ -1.14
NUP88-205ENST00000572809 PDGFRBP09619 1106 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 FAM163BP0C2L3 166 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 PSMC3P17980 439 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 ATF6P18850 670 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 FCARP24071 287 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 ACAT1P24752 427 aaKnown RBP7.95□□□□□ -1.14
NUP88-205ENST00000572809 CYP2F1P24903 491 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 LMO2P25791 158 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 PCSK1P29120 753 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 ATICP31939 592 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 GNL1P36915 607 aaPredicted RBP7.95□□□□□ -1.14
NUP88-205ENST00000572809 AP3M2P53677 418 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 RPL10AP62906 217 aaKnown RBP7.95□□□□□ -1.14
NUP88-205ENST00000572809 GRM2Q14416 872 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 MLF2Q15773 248 aaPredicted RBP7.95□□□□□ -1.14
NUP88-205ENST00000572809 DDR2Q16832 855 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 C11orf91Q3C1V1 193 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 WDR72Q3MJ13 1102 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 ARHGAP15Q53QZ3 475 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 GPR158Q5T848 1215 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 FAM171BQ6P995 826 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 LIMS2Q7Z4I7 341 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 SPATA2LQ8IUW3 424 aaPredicted RBP7.95□□□□□ -1.14
NUP88-205ENST00000572809 ARID3BQ8IVW6 561 aaPredicted RBP7.95□□□□□ -1.14
NUP88-205ENST00000572809 MFSD6LQ8IWD5 586 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 CCDC105Q8IYK2 499 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 PARD3BQ8TEW8 1205 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 CCDC34Q96HJ3 373 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 NELL2Q99435 816 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 KCTD10Q9H3F6 313 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 BRD9Q9H8M2 597 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 MAGEC2Q9UBF1 373 aaPredicted RBP7.95□□□□□ -1.14
NUP88-205ENST00000572809 TCHHQ07283 1943 aa7.95□□□□□ -1.14
NUP88-205ENST00000572809 MUC6Q6W4X9 2439 aa7.94□□□□□ -1.14
NUP88-205ENST00000572809 KMT2EQ8IZD2 1858 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms