RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 C8orf76Q96K31 380 aa10.17□□□□□ -0.78
CIITA-208ENST00000572665 IFT74Q96LB3 600 aa10.17□□□□□ -0.78
CIITA-208ENST00000572665 VN1R3Q9BXE9 311 aa10.17□□□□□ -0.78
CIITA-208ENST00000572665 FOXP1Q9H334 677 aaPredicted RBP10.17□□□□□ -0.78
CIITA-208ENST00000572665 NXF3Q9H4D5 531 aaKnown RBP10.17□□□□□ -0.78
CIITA-208ENST00000572665 WDR6Q9NNW5 1121 aaKnown RBP10.17□□□□□ -0.78
CIITA-208ENST00000572665 CHST7Q9NS84 486 aa10.17□□□□□ -0.78
CIITA-208ENST00000572665 MARCH5Q9NX47 278 aa10.17□□□□□ -0.78
CIITA-208ENST00000572665 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.17□□□□□ -0.78
CIITA-208ENST00000572665 CDH22Q9UJ99 828 aa10.17□□□□□ -0.78
CIITA-208ENST00000572665 DUSP12Q9UNI6 340 aa10.17□□□□□ -0.78
CIITA-208ENST00000572665 LIMCH1Q9UPQ0 1083 aa10.17□□□□□ -0.78
CIITA-208ENST00000572665 HES2Q9Y543 173 aa10.17□□□□□ -0.78
CIITA-208ENST00000572665 ZFP37Q9Y6Q3 630 aaPredicted RBP10.17□□□□□ -0.78
CIITA-208ENST00000572665 CLUHO75153 1309 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 PPM1BO75688 479 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 THP07101 528 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 ASGR2P07307 311 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 OR52Z1P0C646 297 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 AKAP5P24588 427 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 RPA1P27694 616 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 NAMPTP43490 491 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 TRAPPC10P48553 1259 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 EFNA5P52803 228 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 ZNF445P59923 1031 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 TUSC3Q13454 348 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 PRPF4BQ13523 1007 aaKnown RBP10.16□□□□□ -0.78
CIITA-208ENST00000572665 HSP90AA2PQ14568 343 aaPredicted RBP10.16□□□□□ -0.78
CIITA-208ENST00000572665 DCAF4L1Q3SXM0 396 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 LIN9Q5TKA1 542 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 CDCA2Q69YH5 1023 aaPredicted RBP10.16□□□□□ -0.78
CIITA-208ENST00000572665 TMC3Q7Z5M5 1100 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 ADAT2Q7Z6V5 191 aaKnown RBP10.16□□□□□ -0.78
CIITA-208ENST00000572665 CATSPER3Q86XQ3 398 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 FAM184AQ8NB25 1140 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 ZSCAN31Q96LW9 406 aaPredicted RBP10.16□□□□□ -0.78
CIITA-208ENST00000572665 KCNK12Q9HB15 430 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 LRRC4CQ9HCJ2 640 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 GFOD1Q9NXC2 390 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 KCNG1Q9UIX4 513 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 KIF3AQ9Y496 699 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 PIEZO1Q92508 2521 aa10.16□□□□□ -0.78
CIITA-208ENST00000572665 H0Y858 1186 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 ACKR2O00590 384 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 TRAPPC3O43617 180 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 B4GALT3O60512 393 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 NKPD1Q17RQ9 610 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 RTL10Q7L3V2 364 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 MAEAQ7L5Y9 396 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 PALB2Q86YC2 1186 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 FLCNQ8NFG4 579 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 RIN2Q8WYP3 895 aaPredicted RBP10.15□□□□□ -0.78
CIITA-208ENST00000572665 KIFAP3Q92845 792 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 FZD8Q9H461 694 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 EPS15L1Q9UBC2 864 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 WNT16Q9UBV4 365 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 FHOD1Q9Y613 1164 aa10.15□□□□□ -0.78
CIITA-208ENST00000572665 PRR19A6NJB7 356 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 PROB1E7EW31 1015 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 LAD1O00515 517 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 B4GALT5O43286 388 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 TGM5O43548 720 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 SIGLEC6O43699 453 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 JAK2O60674 1132 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 PAPLNO95428 1278 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 EFEMP2O95967 443 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 PDGFBP01127 241 aaPredicted RBP10.14□□□□□ -0.79
CIITA-208ENST00000572665 PRKCBP05771 671 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 CEACAM5P06731 702 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 HNRNPA1P09651 372 aaKnown RBP eCLIP10.14□□□□□ -0.79
CIITA-208ENST00000572665 SRFP11831 508 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 CYP11B2P19099 503 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 AOC1P19801 751 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 ITIH2P19823 946 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 TTC38Q5R3I4 469 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 TAS1R1Q7RTX1 841 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 SPACA3Q8IXA5 215 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 TMEM105Q8N8V8 129 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 ADCY4Q8NFM4 1077 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 SGSM3Q96HU1 749 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 RCC1LQ96I51 464 aaKnown RBP10.14□□□□□ -0.79
CIITA-208ENST00000572665 UROC1Q96N76 676 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 TTPALQ9BTX7 342 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 SPATA9Q9BWV2 254 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 GPR62Q9BZJ7 368 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 NT5C3AQ9H0P0 336 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 TOPORSQ9NS56 1045 aaPredicted RBP10.14□□□□□ -0.79
CIITA-208ENST00000572665 MIOSQ9NXC5 875 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 ST14Q9Y5Y6 855 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 ZDBF2Q9HCK1 2354 aa10.14□□□□□ -0.79
CIITA-208ENST00000572665 SHISA3A0PJX4 238 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 K7ERI5 159 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 AGRPO00253 132 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 CYP26A1O43174 497 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 MED24O75448 989 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 LARGE1O95461 756 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 PRAMEF1O95521 474 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 HOXA9P31269 272 aa10.13□□□□□ -0.79
CIITA-208ENST00000572665 CCT6AP40227 531 aaKnown RBP10.13□□□□□ -0.79
CIITA-208ENST00000572665 NBL1P41271 181 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms