RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CYP2D6P10635 497 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 PCP11498 1178 aaKnown RBP6.73□□□□□ -1.33
VPS53-212ENST00000572259 TNFSF4P23510 183 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 PSMC4P43686 418 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 NT5C2P49902 561 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 ZNF131P52739 623 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 ADKP55263 362 aaKnown RBP6.73□□□□□ -1.33
VPS53-212ENST00000572259 SNX16P57768 344 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 CCNA1P78396 465 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 PPARAQ07869 468 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 MOGSQ13724 837 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 ACAP2Q15057 778 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 PLCB4Q15147 1175 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 SEC23AQ15436 765 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 CLUL1Q15846 466 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 FAM110CQ1W6H9 321 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 ERICH6BQ5W0A0 696 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 PGBD2Q6P3X8 592 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 TEPPQ6URK8 271 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 CWC27Q6UX04 472 aaKnown RBP6.73□□□□□ -1.33
VPS53-212ENST00000572259 CCDC129Q6ZRS4 1044 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 UBE2Q1Q7Z7E8 422 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 DENND1CQ8IV53 801 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 ARL6IP6Q8N6S5 226 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 ZNF713Q8N859 430 aaPredicted RBP6.73□□□□□ -1.33
VPS53-212ENST00000572259 ADAMTS18Q8TE60 1221 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 MZB1Q8WU39 189 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 CPA5Q8WXQ8 436 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 KIAA1191Q96A73 305 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 VMP1Q96GC9 406 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 C12orf42Q96LP6 360 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 PPP1R16BQ96T49 567 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 CHCHD6Q9BRQ6 235 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 APOL5Q9BWW9 433 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 TMEM120AQ9BXJ8 343 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 XPO4Q9C0E2 1151 aaKnown RBP6.73□□□□□ -1.33
VPS53-212ENST00000572259 BHMT2Q9H2M3 363 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 RNF41Q9H4P4 317 aaPredicted RBP6.73□□□□□ -1.33
VPS53-212ENST00000572259 BRD9Q9H8M2 597 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 WASH6PQ9NQA3 447 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 CTNNA3Q9UI47 895 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 MBD1Q9UIS9 605 aaPredicted RBP6.73□□□□□ -1.33
VPS53-212ENST00000572259 PLA2G2DQ9UNK4 145 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 MYH4Q9Y623 1939 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 CCDC171Q6TFL3 1326 aa6.73□□□□□ -1.33
VPS53-212ENST00000572259 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 TSPY2A6NKD2 308 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 F5H0A9 414 aaPredicted RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 ZNF213O14771 459 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 FRS3O43559 492 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 INMTO95050 263 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 HSPD1P10809 573 aaKnown RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 IDEP14735 1019 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 AKR1B1P15121 316 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 SDHAP31040 664 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 TECP42680 631 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 CDR1P51861 262 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 ATXN1P54253 815 aaKnown RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 ARL4CP56559 192 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 HERVK_113P62684 666 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 SMC1AQ14683 1233 aaKnown RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 COG2Q14746 738 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 ANO4Q32M45 955 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 CCDC178Q5BJE1 867 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 SLC45A4Q5BKX6 768 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 TREML2Q5T2D2 321 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 TTC22Q5TAA0 569 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 CREB3L3Q68CJ9 461 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 MCTP1Q6DN14 999 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 CATSPERGQ6ZRH7 1159 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 SYDE1Q6ZW31 735 aaPredicted RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 BRSK2Q8IWQ3 736 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 ZZZ3Q8IYH5 903 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 GRAMD1CQ8IYS0 662 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 ANKRD13CQ8N6S4 541 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 SLC44A5Q8NCS7 719 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 LSM14AQ8ND56 463 aaKnown RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 HIPK4Q8NE63 616 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 APPL2Q8NEU8 664 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 GPRC5AQ8NFJ5 357 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 RAET1EQ8TD07 263 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 ERCC4Q92889 916 aaPredicted RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 C1GALT1C1Q96EU7 318 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 FAM227BQ96M60 508 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 P2RX7Q99572 595 aaKnown RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 SGPP1Q9BX95 441 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 MRPL9Q9BYD2 267 aaKnown RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 NYAP2Q9P242 653 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 IFT80Q9P2H3 777 aaPredicted RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 NFKBIL1Q9UBC1 381 aaPredicted RBP6.72□□□□□ -1.33
VPS53-212ENST00000572259 SLC13A4Q9UKG4 626 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 SH3BP1Q9Y3L3 701 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 PCDHA5Q9Y5H7 936 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 LOC285556D6RIA3 1793 aa6.72□□□□□ -1.33
VPS53-212ENST00000572259 ROBO3Q96MS0 1386 aa6.71□□□□□ -1.33
VPS53-212ENST00000572259 DDX60LQ5H9U9 1706 aaKnown RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 A0A0D9SFI3 127 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 TNPO2O14787 897 aaKnown RBP6.71□□□□□ -1.34
VPS53-212ENST00000572259 N4BP3O15049 544 aa6.71□□□□□ -1.34
VPS53-212ENST00000572259 ADAMTS3O15072 1205 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms