RNA–Protein interactions for RNA: ENST00000568676.5

HERPUD1-215, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 571 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-215ENST00000568676 UPK3BL1B0FP48 263 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 UPK3BL2E5RIL1 263 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 ATP2C2O75185 946 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 TACC1O75410 805 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 KAT7O95251 611 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 BCKDHBP21953 392 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 LMO2P25791 158 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 USP46P62068 366 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 PSMC1P62191 440 aaKnown RBP16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 RESTQ13127 1097 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 TRIM61Q5EBN2 209 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 SLC23A3Q6PIS1 610 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 TMEM92Q6UXU6 159 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 RABEPKQ7Z6M1 372 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 CCDC65Q8IXS2 484 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 TXNDC5Q8NBS9 432 aaKnown RBP16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 CEP76Q8TAP6 659 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 NOC3LQ8WTT2 800 aaKnown RBP16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 OVCA2Q8WZ82 227 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 MMS19Q96T76 1030 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 DUSP9Q99956 384 aaKnown RBP16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 TMEM121BQ9BXQ6 578 aaPredicted RBP16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 LRRC27Q9C0I9 530 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 ELOVL4Q9GZR5 314 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 PCIF1Q9H4Z3 704 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 UPF2Q9HAU5 1272 aaKnown RBP16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 CPQQ9Y646 472 aa16.79■□□□□ 0.28
HERPUD1-215ENST00000568676 E2F8A0AVK6 867 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 PATE3B3GLJ2 98 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 HCRTO43612 131 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 PRPF6O94906 941 aaKnown RBP16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 KLF8O95600 359 aaPredicted RBP16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 ADH5P11766 374 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 RDXP35241 583 aaKnown RBP16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 GNL1P36915 607 aaPredicted RBP16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 STAT6P42226 847 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 KIR2DL1P43626 348 aaPredicted RBP16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 PEAR1Q5VY43 1037 aaPredicted RBP16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 TTC30AQ86WT1 665 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 ALLCQ8N6M5 410 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 RNF38Q9H0F5 515 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 SNX25Q9H3E2 840 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 ARHGEF4Q9NR80 690 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 BCCIPQ9P287 314 aaKnown RBP eCLIP16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 CLIC4Q9Y696 253 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 LAMA1P25391 3075 aa16.78■□□□□ 0.28
HERPUD1-215ENST00000568676 FAM208BQ5VWN6 2430 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 THADAQ6YHU6 1953 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 F8VP50 259 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 H0Y626 953 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 AP5Z1O43299 807 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 RTN3O95197 1032 aaPredicted RBP16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 TRIM16O95361 564 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 PDGFRBP09619 1106 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 GAD2Q05329 585 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 TAF10Q12962 218 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 UAP1L1Q3KQV9 507 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 LYSMD4Q5XG99 296 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 BTBD8Q5XKL5 378 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 RHBDF2Q6PJF5 856 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 SLC36A4Q6YBV0 504 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 HS2ST1Q7LGA3 356 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 OR5B17Q8NGF7 314 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 GATA6Q92908 595 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 FNBP1Q96RU3 617 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 SCNM1Q9BWG6 230 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 CFAP97Q9P2B7 532 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 NEUROG3Q9Y4Z2 214 aa16.77■□□□□ 0.28
HERPUD1-215ENST00000568676 VPS37CA5D8V6 355 aaPredicted RBP16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 SGK1O00141 431 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 CD2BP2O95400 341 aaKnown RBP16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 ABL1P00519 1130 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 MBL2P11226 248 aaPredicted RBP16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 TIE1P35590 1138 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 TUBP50607 506 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 ATXN3P54252 364 aaPredicted RBP16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 SNRPFP62306 86 aaKnown RBP16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 HNRNPDQ14103 355 aaKnown RBP16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 MAP7D1Q3KQU3 841 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 MDH1BQ5I0G3 518 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 SCARA3Q6AZY7 606 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 TRAPPC11Q7Z392 1133 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 NUP93Q8N1F7 819 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 DEFB124Q8NES8 71 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 HSPBP1Q9NZL4 362 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 ABCA7Q8IZY2 2146 aa16.76■□□□□ 0.27
HERPUD1-215ENST00000568676 ATP8B3O60423 1300 aa16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 PTPRJQ12913 1337 aa16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 PTPRDP23468 1912 aa16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 EIF3DO15371 548 aaKnown RBP eCLIP16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 ZBTB24O43167 697 aaPredicted RBP16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 HOXC11O43248 304 aaPredicted RBP16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 STAU1O95793 577 aaKnown RBP16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 CHRM1P11229 460 aaPredicted RBP16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 HNRNPLP14866 589 aaKnown RBP eCLIP16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 ENGP17813 658 aa16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 PTPN1P18031 435 aaKnown RBP16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 YWHAQP27348 245 aa16.75■□□□□ 0.27
HERPUD1-215ENST00000568676 SLC6A11P48066 632 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms