RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ABHD2P08910 425 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 SETSIPP0DME0 302 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 CDH6P55285 790 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 ATP11AP98196 1134 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 SLC6A3Q01959 620 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 SOX4Q06945 474 aaPredicted RBP21.23■□□□□ 0.99
CLN3-230ENST00000568076 DPYSL3Q14195 570 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 XKR4Q5GH76 650 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 FBXO47Q5MNV8 452 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 HP1BP3Q5SSJ5 553 aaPredicted RBP21.23■□□□□ 0.99
CLN3-230ENST00000568076 ZNF618Q5T7W0 954 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 ARHGAP17Q68EM7 881 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 VSTM1Q6UX27 236 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 NPNTQ6UXI9 565 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 CHMP6Q96FZ7 201 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 B3GNT5Q9BYG0 378 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 RSAD1Q9HA92 442 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 GOLGA2P5Q9HBQ8 144 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 LGALS13Q9UHV8 139 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.23■□□□□ 0.99
CLN3-230ENST00000568076 TRIP12Q14669 1992 aaPredicted RBP21.23■□□□□ 0.99
CLN3-230ENST00000568076 PDCD11Q14690 1871 aaKnown RBP21.22■□□□□ 0.99
CLN3-230ENST00000568076 IGHA2P01877 340 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 LMO2P25791 158 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 RPL22P35268 128 aaKnown RBP21.22■□□□□ 0.99
CLN3-230ENST00000568076 GAD2Q05329 585 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 STAT4Q14765 748 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 ANKRD22Q5VYY1 191 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 C17orf99Q6UX52 265 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 CEP128Q6ZU80 1094 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 C10orf67Q8IYJ2 551 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 ARRDC4Q8NCT1 418 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 CPT1BQ92523 772 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 HESX1Q9UBX0 185 aa21.22■□□□□ 0.99
CLN3-230ENST00000568076 PDGFRBP09619 1106 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 CTCFP49711 727 aaPredicted RBP21.21■□□□□ 0.99
CLN3-230ENST00000568076 EIF3EP60228 445 aaKnown RBP21.21■□□□□ 0.99
CLN3-230ENST00000568076 PRMT1Q99873 361 aaKnown RBP21.21■□□□□ 0.99
CLN3-230ENST00000568076 TBK1Q9UHD2 729 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 NAALADL1Q9UQQ1 740 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 C17orf102A2RUQ5 167 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 KPNA7A9QM74 516 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 GOLGA8MH3BSY2 632 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 PRPSAP2O60256 369 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 CCDC130P13994 396 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 KCNE1P15382 129 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 IL4RP24394 825 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 GCAP28676 217 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 ZNF157P51786 506 aaPredicted RBP21.21■□□□□ 0.99
CLN3-230ENST00000568076 NRLP54845 237 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 SESTD1Q86VW0 696 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 SPATS2Q86XZ4 545 aaKnown RBP21.21■□□□□ 0.99
CLN3-230ENST00000568076 C7orf31Q8N865 590 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 SMG8Q8ND04 991 aaKnown RBP21.21■□□□□ 0.99
CLN3-230ENST00000568076 STK32AQ8WU08 396 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 RSAD2Q8WXG1 361 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 AP5M1Q9H0R1 490 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 CCDC134Q9H6E4 229 aa21.21■□□□□ 0.99
CLN3-230ENST00000568076 ATXN2Q99700 1313 aaKnown RBP21.2■□□□□ 0.98
CLN3-230ENST00000568076 ALOX15BO15296 676 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 CDH16O75309 829 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 BANF1O75531 89 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 CD4P01730 458 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 RBP3P10745 1247 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 ATP5DP30049 168 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 HOXC8P31273 242 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 CRYBB1P53674 252 aaPredicted RBP21.2■□□□□ 0.98
CLN3-230ENST00000568076 NOMO1Q15155 1222 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 C6orf89Q6UWU4 347 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 CRYBG2Q8N1P7 616 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 NAT8LQ8N9F0 302 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 FAM71DQ8N9W8 422 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 SPATA18Q8TC71 538 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 CLEC4CQ8WTT0 213 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 FAM172AQ8WUF8 416 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 NGRNQ9NPE2 291 aaKnown RBP21.2■□□□□ 0.98
CLN3-230ENST00000568076 GPATCH2LQ9NWQ4 482 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 GDAP2Q9NXN4 497 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 IPPQ9Y573 584 aa21.2■□□□□ 0.98
CLN3-230ENST00000568076 A0A087WUV0 522 aaPredicted RBP21.19■□□□□ 0.98
CLN3-230ENST00000568076 TMEM120BA0PK00 339 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 TFE3P19532 575 aaPredicted RBP21.19■□□□□ 0.98
CLN3-230ENST00000568076 PURAQ00577 322 aaKnown RBP21.19■□□□□ 0.98
CLN3-230ENST00000568076 ZC3H12AQ5D1E8 599 aaKnown RBP21.19■□□□□ 0.98
CLN3-230ENST00000568076 LIMS2Q7Z4I7 341 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 PPIL6Q8IXY8 311 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 ZBED8Q8IZ13 594 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 SEC16BQ96JE7 1060 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 TTC25Q96NG3 672 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 CCDC77Q9BR77 488 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 GGA2Q9UJY4 613 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 Q9Y3F1 56 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 TCRBV7S3A2A0A539 114 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 MANSC4A6NHS7 340 aaPredicted RBP21.19■□□□□ 0.98
CLN3-230ENST00000568076 MCF2LO15068 1137 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 ADORA2BP29275 332 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 SDC4P31431 198 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 GNL1P36915 607 aaPredicted RBP21.19■□□□□ 0.98
CLN3-230ENST00000568076 RGS2P41220 211 aa21.19■□□□□ 0.98
CLN3-230ENST00000568076 PDIA2Q13087 525 aaKnown RBP21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms