RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 EDEM3Q9BZQ6 932 aa14.24□□□□□ -0.13
CLK3-218ENST00000566926 SDCBP2Q9H190 292 aa14.24□□□□□ -0.13
CLK3-218ENST00000566926 ARHGEF3Q9NR81 526 aa14.24□□□□□ -0.13
CLK3-218ENST00000566926 CA14Q9ULX7 337 aa14.24□□□□□ -0.13
CLK3-218ENST00000566926 COQ4Q9Y3A0 265 aa14.24□□□□□ -0.13
CLK3-218ENST00000566926 NME7Q9Y5B8 376 aa14.24□□□□□ -0.13
CLK3-218ENST00000566926 F5P12259 2224 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 A0A1W2PQJ5 194 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 HEPACAM2A8MVW5 462 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 F8VP50 259 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 NRG2O14511 850 aaPredicted RBP14.23□□□□□ -0.13
CLK3-218ENST00000566926 ZNF263O14978 683 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 TEX33O43247 280 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 RTN3O95197 1032 aaPredicted RBP14.23□□□□□ -0.13
CLK3-218ENST00000566926 PDGFBP01127 241 aaPredicted RBP14.23□□□□□ -0.13
CLK3-218ENST00000566926 PFKLP17858 780 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 VIPR2P41587 438 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 YWHAEP62258 255 aaKnown RBP14.23□□□□□ -0.13
CLK3-218ENST00000566926 KCNH2Q12809 1159 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 TBX2Q13207 712 aaPredicted RBP14.23□□□□□ -0.13
CLK3-218ENST00000566926 SLC44A4Q53GD3 710 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 STXBP5Q5T5C0 1151 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 POTEHQ6S545 545 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 VITQ6UXI7 678 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 CCDC186Q7Z3E2 898 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 MON1AQ86VX9 555 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 CMTM8Q8IZV2 173 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 CELF5Q8N6W0 485 aaKnown RBP14.23□□□□□ -0.13
CLK3-218ENST00000566926 ELMO3Q96BJ8 720 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 KIF9Q9HAQ2 790 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 APOBEC3GQ9HC16 384 aaKnown RBP14.23□□□□□ -0.13
CLK3-218ENST00000566926 DMAP1Q9NPF5 467 aaPredicted RBP14.23□□□□□ -0.13
CLK3-218ENST00000566926 TRPV5Q9NQA5 729 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.23□□□□□ -0.131e-7■■■■■ 115.4
CLK3-218ENST00000566926 TRPM5Q9NZQ8 1165 aa14.23□□□□□ -0.13
CLK3-218ENST00000566926 KRBA1A5PL33 1030 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 CHADO15335 359 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 AOC1P19801 751 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 GDI1P31150 447 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 FMO5P49326 533 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 STARD6P59095 220 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 SYCP1Q15431 976 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 MLF2Q15773 248 aaPredicted RBP14.22□□□□□ -0.13
CLK3-218ENST00000566926 CBWD6Q4V339 395 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 ARHGAP29Q52LW3 1261 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 CBWD3Q5JTY5 395 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 CBWD5Q5RIA9 395 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 TMEM150AQ86TG1 271 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 FAM35AQ86V20 835 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 FMNL3Q8IVF7 1028 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 NUP93Q8N1F7 819 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 MAB21L3Q8N8X9 362 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 ZNF397Q8NF99 534 aaPredicted RBP14.22□□□□□ -0.13
CLK3-218ENST00000566926 SEMA4DQ92854 862 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 SLITRK1Q96PX8 696 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 TTLL2Q9BWV7 592 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 SLC46A2Q9BY10 475 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 ZNF518BQ9C0D4 1074 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 IRF2BPLQ9H1B7 796 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 NUCKS1Q9H1E3 243 aaKnown RBP14.22□□□□□ -0.13
CLK3-218ENST00000566926 THG1LQ9NWX6 298 aaKnown RBP14.22□□□□□ -0.13
CLK3-218ENST00000566926 COMMD8Q9NX08 183 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 KIF26AQ9ULI4 1882 aaPredicted RBP14.22□□□□□ -0.13
CLK3-218ENST00000566926 PATJQ8NI35 1801 aa14.22□□□□□ -0.13
CLK3-218ENST00000566926 MYO16Q9Y6X6 1858 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 TRAV19A0A0A6YYK7 116 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 AKR1B15C9JRZ8 316 aaPredicted RBP14.21□□□□□ -0.13
CLK3-218ENST00000566926 CLDN5O00501 218 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 CILPO75339 1184 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 AP1G2O75843 785 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 USP17L7P0C7H9 530 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 GLULP15104 373 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 CD58P19256 250 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 TBXAS1P24557 533 aaPredicted RBP14.21□□□□□ -0.13
CLK3-218ENST00000566926 FCHO2Q0JRZ9 810 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 GRM2Q14416 872 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 EXOC3L4Q17RC7 722 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 TSR1Q2NL82 804 aaKnown RBP14.21□□□□□ -0.13
CLK3-218ENST00000566926 GBP6Q6ZN66 633 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 FUKQ8N0W3 1084 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 STKLD1Q8NE28 680 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 PDZD8Q8NEN9 1154 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 BPIFB1Q8TDL5 484 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 CSGALNACT1Q8TDX6 532 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 PCMTD1Q96MG8 357 aaPredicted RBP14.21□□□□□ -0.13
CLK3-218ENST00000566926 NELL2Q99435 816 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 TBC1D17Q9HA65 648 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 PLCB1Q9NQ66 1216 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 TDP1Q9NUW8 608 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 SIK3Q9Y2K2 1263 aa14.21□□□□□ -0.13
CLK3-218ENST00000566926 MRPS17Q9Y2R5 130 aaKnown RBP14.21□□□□□ -0.13
CLK3-218ENST00000566926 MUC6Q6W4X9 2439 aa14.21□□□□□ -0.14
CLK3-218ENST00000566926 MAN2B1O00754 1011 aa14.2□□□□□ -0.14
CLK3-218ENST00000566926 FAM200BP0CF97 657 aa14.2□□□□□ -0.14
CLK3-218ENST00000566926 NPR3P17342 541 aa14.2□□□□□ -0.14
CLK3-218ENST00000566926 YWHAQP27348 245 aa14.2□□□□□ -0.14
CLK3-218ENST00000566926 VCPP55072 806 aaKnown RBP14.2□□□□□ -0.14
CLK3-218ENST00000566926 MLLT6P55198 1093 aaPredicted RBP14.2□□□□□ -0.14
CLK3-218ENST00000566926 ZNF268Q14587 947 aaPredicted RBP14.2□□□□□ -0.14
CLK3-218ENST00000566926 TXNDC8Q6A555 127 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms