RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SLFN12LQ6IEE8 588 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 EXOC8Q8IYI6 725 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 ARMC2Q8NEN0 867 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 SLC7A3Q8WY07 619 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 ZNF75CPQ92670 426 aaPredicted RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 SLC7A6OSQ96CW6 309 aaPredicted RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 TBC1D10AQ9BXI6 508 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 PHACTR1Q9C0D0 580 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 CYLDQ9NQC7 956 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 DDX56Q9NY93 547 aaKnown RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 RPL26L1Q9UNX3 145 aaKnown RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 PTPRJQ12913 1337 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 EVPLQ92817 2033 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 THSD7BQ9C0I4 1608 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 A0A1W2PPM1 405 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 C2CD2LO14523 706 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 HNRNPCL1O60812 293 aaKnown RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 TCF4P15884 667 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 GNAZP19086 355 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 SSTR3P32745 418 aaPredicted RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 SLC26A2P50443 739 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 NOP14P78316 857 aaKnown RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 FYB2Q5VWT5 728 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 FAM13CQ8NE31 585 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 STK32AQ8WU08 396 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 KCNN1Q92952 543 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 CCDC97Q96F63 343 aaPredicted RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 MAK16Q9BXY0 300 aaKnown RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 SAR1AQ9NR31 198 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 RBAKQ9NYW8 714 aaPredicted RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 LRRC42Q9Y546 428 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 hCG_1818297A0A087WSY0 165 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 CYBAP13498 195 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 KRT4P19013 534 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 PHBP35232 272 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 PLCB3Q01970 1234 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 PIGHQ14442 188 aaPredicted RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 TAF11Q15544 211 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 HIF1AQ16665 826 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 WASHC2DQ5SRD0 308 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 LVRNQ6Q4G3 990 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 CAPN12Q6ZSI9 719 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 OTOAQ7RTW8 1153 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 LONP2Q86WA8 852 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 DRAXINQ8NBI3 349 aaPredicted RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 SH3TC2Q8TF17 1288 aa13.85□□□□□ -0.19
VPS4A-204ENST00000566354 NAF1Q96HR8 494 aaKnown RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 CHCHD3Q9NX63 227 aaKnown RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 NKX1-2Q9UD57 310 aaPredicted RBP13.85□□□□□ -0.19
VPS4A-204ENST00000566354 A6NJR5 290 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 F8VP50 259 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 H3BRB1 525 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 SGK1O00141 431 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 PEX11AO75192 247 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 LSM8O95777 96 aaKnown RBP13.84□□□□□ -0.19
VPS4A-204ENST00000566354 HOXD8P13378 290 aaPredicted RBP13.84□□□□□ -0.19
VPS4A-204ENST00000566354 CDKN2BP42772 138 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 BEX3Q00994 111 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 TAP1Q03518 808 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 ZNF252P-AS1Q0IIN9 211 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 DGKDQ16760 1214 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 MFSD14CQ5VZR4 134 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 DNAJC24Q6P3W2 148 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 DCUN1D2Q6PH85 259 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 PPP1R13LQ8WUF5 828 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 CGRRF1Q99675 332 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 TMEM121Q9BTD3 319 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 TUT1Q9H6E5 874 aaKnown RBP13.84□□□□□ -0.19
VPS4A-204ENST00000566354 SRRDQ9UH36 339 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 LNPEPQ9UIQ6 1025 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 RABGEF1Q9UJ41 708 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 TCRBV5S1A1TA0A578 114 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 HBP1O60381 514 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 MAFO75444 373 aaPredicted RBP13.84□□□□□ -0.19
VPS4A-204ENST00000566354 NEBLO76041 1014 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 IFNB1P01574 187 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 PIGRP01833 764 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 PTPN4P29074 926 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 RFC5P40937 340 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 ZNF132P52740 706 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 GPX6P59796 221 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 IGBP1P78318 339 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 RNASELQ05823 741 aaKnown RBP13.84□□□□□ -0.19
VPS4A-204ENST00000566354 BLMHQ13867 455 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 SEPT7Q16181 437 aaKnown RBP13.84□□□□□ -0.19
VPS4A-204ENST00000566354 ZNF449Q6P9G9 518 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 NLRP9Q7RTR0 991 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 LRRC71Q8N4P6 559 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 TEX9Q8N6V9 391 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 ENDOVQ8N8Q3 282 aaKnown RBP13.84□□□□□ -0.19
VPS4A-204ENST00000566354 ATP11CQ8NB49 1132 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 SLC35B2Q8TB61 432 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 ASAP3Q8TDY4 903 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 PYROXD1Q8WU10 500 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 ZNF296Q8WUU4 475 aaPredicted RBP13.84□□□□□ -0.19
VPS4A-204ENST00000566354 MRRFQ96E11 262 aaKnown RBP13.84□□□□□ -0.19
VPS4A-204ENST00000566354 MCEEQ96PE7 176 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 NUDCD1Q96RS6 583 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 TLE6Q9H808 572 aa13.84□□□□□ -0.19
VPS4A-204ENST00000566354 IRAK4Q9NWZ3 460 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms