RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 TAF10Q12962 218 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 NCOA4Q13772 614 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 FAM160A2Q8N612 972 aaPredicted RBP15.85■□□□□ 0.13
CLN3-222ENST00000566083 RIN3Q8TB24 985 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 TMC2Q8TDI7 906 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 CHFRQ96EP1 664 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 CCDC34Q96HJ3 373 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 DMAC2Q9NW81 257 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 TBC1D14Q9P2M4 693 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 PTPRDP23468 1912 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 LEFTY2O00292 366 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 MAPK13O15264 365 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 ACTN4O43707 911 aaKnown RBP15.85■□□□□ 0.13
CLN3-222ENST00000566083 CALUO43852 315 aaPredicted RBP15.85■□□□□ 0.13
CLN3-222ENST00000566083 KLRC4O43908 158 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 APBB3O95704 486 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 OLFM2O95897 454 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 USP46P62068 366 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 STK4Q13043 487 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 KMT5BQ4FZB7 885 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 PRR23CQ6ZRP0 262 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 C11orf74Q86VG3 221 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 DDX1Q92499 740 aaKnown RBP15.85■□□□□ 0.13
CLN3-222ENST00000566083 OTUB2Q96DC9 234 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 SMARCD1Q96GM5 515 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 SPATA32Q96LK8 384 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 GZF1Q9H116 711 aaPredicted RBP15.85■□□□□ 0.13
CLN3-222ENST00000566083 PARD6AQ9NPB6 346 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 DMAP1Q9NPF5 467 aaPredicted RBP15.85■□□□□ 0.13
CLN3-222ENST00000566083 C2orf42Q9NWW7 574 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 EBF1Q9UH73 591 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 PCDHGA5Q9Y5G8 931 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 FRYLO94915 3013 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 DMXL1Q9Y485 3027 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 LRRIQ3A6PVS8 624 aaPredicted RBP15.84■□□□□ 0.13
CLN3-222ENST00000566083 AXIN1O15169 862 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 ABL1P00519 1130 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 OAS1P00973 400 aaKnown RBP15.84■□□□□ 0.13
CLN3-222ENST00000566083 C4BPAP04003 597 aaKnown RBP15.84■□□□□ 0.13
CLN3-222ENST00000566083 NR3C1P04150 777 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 EIF2DP41214 584 aaKnown RBP15.84■□□□□ 0.13
CLN3-222ENST00000566083 TUBP50607 506 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 PREPLQ4J6C6 727 aaPredicted RBP15.84■□□□□ 0.13
CLN3-222ENST00000566083 UNC93AQ86WB7 457 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 ADGRG2Q8IZP9 1017 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 RPLP0P6Q8NHW5 317 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 FBXO32Q969P5 355 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 ZC3H10Q96K80 434 aaKnown RBP15.84■□□□□ 0.13
CLN3-222ENST00000566083 MED10Q9BTT4 135 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 B3GNT5Q9BYG0 378 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 IMPG2Q9BZV3 1241 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 ZNF518BQ9C0D4 1074 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 LINC00597Q9H2U6 94 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 KCTD10Q9H3F6 313 aa15.84■□□□□ 0.13
CLN3-222ENST00000566083 FBRSL1Q9HCM7 1045 aaKnown RBP15.84■□□□□ 0.13
CLN3-222ENST00000566083 SLC30A4O14863 429 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 ADH1CP00326 375 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 PFKFB1P16118 471 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 SYKP43405 635 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 RAP1GAPP47736 663 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 ENPEPQ07075 957 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 SRSF5Q13243 272 aaKnown RBP15.83■□□□□ 0.12
CLN3-222ENST00000566083 ZACNQ401N2 412 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 HSF5Q4G112 596 aaPredicted RBP15.83■□□□□ 0.12
CLN3-222ENST00000566083 SNX30Q5VWJ9 437 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 PKN3Q6P5Z2 889 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 GRAMD1CQ8IYS0 662 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 KIAA0895Q8NCT3 520 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 DUSP9Q99956 384 aaKnown RBP15.83■□□□□ 0.12
CLN3-222ENST00000566083 SCAND2PQ9GZW5 306 aaPredicted RBP15.83■□□□□ 0.12
CLN3-222ENST00000566083 DPEP3Q9H4B8 488 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 FBXO44Q9H4M3 255 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 TRAF3IP3Q9Y228 551 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 NME7Q9Y5B8 376 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 CPQQ9Y646 472 aa15.83■□□□□ 0.12
CLN3-222ENST00000566083 A0A1B0GVL5 298 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 E2F8A0AVK6 867 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 MED19A0JLT2 244 aaPredicted RBP15.82■□□□□ 0.12
CLN3-222ENST00000566083 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.82■□□□□ 0.12
CLN3-222ENST00000566083 RHOBTB1O94844 696 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 ZNF806P0C7X5 589 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 MBL2P11226 248 aaPredicted RBP15.82■□□□□ 0.12
CLN3-222ENST00000566083 RPL13P26373 211 aaKnown RBP15.82■□□□□ 0.12
CLN3-222ENST00000566083 CASP4P49662 377 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 MRPS21P82921 87 aaKnown RBP15.82■□□□□ 0.12
CLN3-222ENST00000566083 PKP1Q13835 747 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 DMC1Q14565 340 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 ELF2Q15723 593 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 NFIL3Q16649 462 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 HECTD3Q5T447 861 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 NUDT18Q6ZVK8 323 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 INTS8Q75QN2 995 aaKnown RBP15.82■□□□□ 0.12
CLN3-222ENST00000566083 FAM35AQ86V20 835 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 CRYBG2Q8N1P7 616 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 RNF38Q9H0F5 515 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 SMYD3Q9H7B4 428 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 IL37Q9NZH6 218 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 HPSEQ9Y251 543 aa15.82■□□□□ 0.12
CLN3-222ENST00000566083 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.82■□□□□ 0.12
CLN3-222ENST00000566083 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms