RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CPNE8Q86YQ8 564 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 VPS52Q8N1B4 723 aa32.15■■■□□ 2.74
CTCF-203ENST00000566078 PLXNA3P51805 1871 aa32.14■■■□□ 2.74
CTCF-203ENST00000566078 F8VP50 259 aa32.14■■■□□ 2.74
CTCF-203ENST00000566078 GRIK1P39086 918 aa32.14■■■□□ 2.74
CTCF-203ENST00000566078 TKTL1P51854 596 aa32.14■■■□□ 2.74
CTCF-203ENST00000566078 OGDHQ02218 1023 aa32.14■■■□□ 2.74
CTCF-203ENST00000566078 RPS6KA1Q15418 735 aa32.14■■■□□ 2.74
CTCF-203ENST00000566078 EMC1Q8N766 993 aa32.14■■■□□ 2.74
CTCF-203ENST00000566078 LCMT1Q9UIC8 334 aa32.14■■■□□ 2.74
CTCF-203ENST00000566078 SNX12Q9UMY4 172 aa32.14■■■□□ 2.74
CTCF-203ENST00000566078 MTMR11A4FU01 709 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 SPOPO43791 374 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 GRAP2O75791 330 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 RNASE9P60153 205 aaKnown RBP32.13■■■□□ 2.73
CTCF-203ENST00000566078 ZNF252P-AS1Q0IIN9 211 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 RAB41Q5JT25 222 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 SLC8B1Q6J4K2 584 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 RNF19BQ6ZMZ0 732 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 SCN4BQ8IWT1 228 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 KLHL23Q8NBE8 558 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 STK39Q9UEW8 545 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 SAR1BQ9Y6B6 198 aa32.13■■■□□ 2.73
CTCF-203ENST00000566078 ADAM12O43184 909 aa32.12■■■□□ 2.73
CTCF-203ENST00000566078 CTNNB1P35222 781 aa32.12■■■□□ 2.73
CTCF-203ENST00000566078 SMARCB1Q12824 385 aa32.12■■■□□ 2.73
CTCF-203ENST00000566078 SHHQ15465 462 aa32.12■■■□□ 2.73
CTCF-203ENST00000566078 ATAD1Q8NBU5 361 aa32.12■■■□□ 2.73
CTCF-203ENST00000566078 HES6Q96HZ4 224 aa32.12■■■□□ 2.73
CTCF-203ENST00000566078 PSMB7Q99436 277 aa32.12■■■□□ 2.73
CTCF-203ENST00000566078 PNPLA8Q9NP80 782 aa32.12■■■□□ 2.73
CTCF-203ENST00000566078 TMEM59LQ9UK28 342 aa32.12■■■□□ 2.73
CTCF-203ENST00000566078 DNAJB2P25686 324 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 OR1D2P34982 312 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 SCNN1AP37088 669 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 NDUFV1P49821 464 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 ROR1Q01973 937 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 ADCY1Q08828 1119 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 TAF5Q15542 800 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 VSTM1Q6UX27 236 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 GADD45GIP1Q8TAE8 222 aaPredicted RBP32.11■■■□□ 2.73
CTCF-203ENST00000566078 SPPL2BQ8TCT7 592 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 WDR27A2RRH5 827 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 FBXO21O94952 628 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 PSMA2P25787 234 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 SLC1A1P43005 524 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 MAGEA11P43364 429 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 SLC26A9Q7LBE3 791 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 TTC9BQ8N6N2 239 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 FNIP1Q8TF40 1166 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 C2orf15Q8WU43 125 aaKnown RBP32.11■■■□□ 2.73
CTCF-203ENST00000566078 AUTS2Q8WXX7 1259 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 OSBPL9Q96SU4 736 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 CLSTN3Q9BQT9 956 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 ULBP1Q9BZM6 244 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 USTQ9Y2C2 406 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 MRFAP1Q9Y605 127 aa32.11■■■□□ 2.73
CTCF-203ENST00000566078 LINC01553A4QN01 128 aa32.1■■■□□ 2.73
CTCF-203ENST00000566078 GRXCR1A8MXD5 290 aa32.1■■■□□ 2.73
CTCF-203ENST00000566078 SRGAP2O75044 1071 aa32.1■■■□□ 2.73
CTCF-203ENST00000566078 VNN2O95498 520 aa32.1■■■□□ 2.73
CTCF-203ENST00000566078 MAN1A1P33908 653 aa32.1■■■□□ 2.73
CTCF-203ENST00000566078 MRPS5P82675 430 aaKnown RBP32.1■■■□□ 2.73
CTCF-203ENST00000566078 NDRG1Q92597 394 aaKnown RBP32.1■■■□□ 2.73
CTCF-203ENST00000566078 KHSRPQ92945 711 aaKnown RBP eCLIP32.1■■■□□ 2.73
CTCF-203ENST00000566078 TRIM66O15016 1216 aa32.09■■■□□ 2.73
CTCF-203ENST00000566078 GPD1P21695 349 aa32.09■■■□□ 2.73
CTCF-203ENST00000566078 FLT3P36888 993 aa32.09■■■□□ 2.73
CTCF-203ENST00000566078 PIGHQ14442 188 aaPredicted RBP32.09■■■□□ 2.73
CTCF-203ENST00000566078 DAB2IPQ5VWQ8 1189 aa32.09■■■□□ 2.73
CTCF-203ENST00000566078 FAM109BQ6ICB4 259 aaPredicted RBP32.09■■■□□ 2.73
CTCF-203ENST00000566078 ZBP1Q9H171 429 aa32.09■■■□□ 2.73
CTCF-203ENST00000566078 CNGB3Q9NQW8 809 aa32.09■■■□□ 2.73
CTCF-203ENST00000566078 MRPL17Q9NRX2 175 aaKnown RBP32.09■■■□□ 2.73
CTCF-203ENST00000566078 CDC23Q9UJX2 597 aa32.09■■■□□ 2.73
CTCF-203ENST00000566078 RWDD3Q9Y3V2 267 aa32.09■■■□□ 2.73
CTCF-203ENST00000566078 MYOGP15173 224 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 CXCR5P32302 372 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 BMPR1AP36894 532 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 GPR15P49685 360 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 EFHC1Q5JVL4 640 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 TRNP1Q6NT89 227 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 NIPA2Q8N8Q9 360 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 CD101Q93033 1021 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 C8orf48Q96LL4 319 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 L2HGDHQ9H9P8 463 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 C2CD4BA6NLJ0 364 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 MIF4GDA9UHW6 222 aaKnown RBP32.08■■■□□ 2.73
CTCF-203ENST00000566078 DDX3YO15523 660 aaKnown RBP32.08■■■□□ 2.73
CTCF-203ENST00000566078 PRLRP16471 622 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 TCP1P17987 556 aaKnown RBP32.08■■■□□ 2.73
CTCF-203ENST00000566078 DAOAP59103 153 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 RXFP2Q8WXD0 754 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 SLC27A5Q9Y2P5 690 aa32.08■■■□□ 2.73
CTCF-203ENST00000566078 USP17L7P0C7H9 530 aa32.07■■■□□ 2.72
CTCF-203ENST00000566078 SLC5A3P53794 718 aa32.07■■■□□ 2.72
CTCF-203ENST00000566078 TUBB2AQ13885 445 aa32.07■■■□□ 2.72
CTCF-203ENST00000566078 DDR2Q16832 855 aa32.07■■■□□ 2.72
CTCF-203ENST00000566078 MGAT5BQ3V5L5 792 aa32.07■■■□□ 2.72
CTCF-203ENST00000566078 UBL4BQ8N7F7 174 aa32.07■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms