RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TMEM110Q86TL2 294 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 ERICH1Q86X53 443 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 CPA5Q8WXQ8 436 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 PPP1R13BQ96KQ4 1090 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 IGFLR1Q9H665 355 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 NAGPAQ9UK23 515 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 NENFQ9UMX5 172 aa21.75■■□□□ 1.07
CLN3-212ENST00000564574 SPDYE4A6NLX3 237 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 EIF3CLB5ME19 914 aaKnown RBP21.74■■□□□ 1.07
CLN3-212ENST00000564574 PAPLNO95428 1278 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 LCA5LO95447 670 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 RGS7P49802 495 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 SLC5A3P53794 718 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 GFPT1Q06210 699 aaPredicted RBP21.74■■□□□ 1.07
CLN3-212ENST00000564574 ADAM15Q13444 863 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 PTPN20Q4JDL3 420 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 CCDC122Q5T0U0 273 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 C10orf76Q5T2E6 689 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 SCML4Q8N228 414 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 ELMOD1Q8N336 334 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 VCPIP1Q96JH7 1222 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 EIF3CQ99613 913 aaKnown RBP21.74■■□□□ 1.07
CLN3-212ENST00000564574 CDX2Q99626 313 aaPredicted RBP21.74■■□□□ 1.07
CLN3-212ENST00000564574 ISCUQ9H1K1 167 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 FBXO44Q9H4M3 255 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 SFXN1Q9H9B4 322 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 ST7Q9NRC1 585 aa21.74■■□□□ 1.07
CLN3-212ENST00000564574 EPN1Q9Y6I3 576 aaPredicted RBP21.74■■□□□ 1.07
CLN3-212ENST00000564574 SLC38A8A6NNN8 435 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 FBXO21O94952 628 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 NDUFA10O95299 355 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 IPO7O95373 1038 aaKnown RBP21.73■■□□□ 1.07
CLN3-212ENST00000564574 CALB1P05937 261 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 MMP8P22894 467 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 GTF2F1P35269 517 aaKnown RBP eCLIP21.73■■□□□ 1.07
CLN3-212ENST00000564574 GABRB2P47870 512 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 CCZ1BP86790 482 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 CCZ1P86791 482 aaPredicted RBP21.73■■□□□ 1.07
CLN3-212ENST00000564574 C1QBPQ07021 282 aaKnown RBP21.73■■□□□ 1.07
CLN3-212ENST00000564574 SDHAF4Q5VUM1 108 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 RAD9BQ6WBX8 426 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 SIX6OS1Q8N1H7 587 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 CMASQ8NFW8 434 aaPredicted RBP21.73■■□□□ 1.07
CLN3-212ENST00000564574 VN1R2Q8NFZ6 395 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 GIPC2Q8TF65 315 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 PSMG2Q969U7 264 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 TRIM11Q96F44 468 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 CPXM1Q96SM3 734 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 TTLL2Q9BWV7 592 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 SYNCQ9H7C4 482 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 LUC7LQ9NQ29 371 aaKnown RBP21.73■■□□□ 1.07
CLN3-212ENST00000564574 IL37Q9NZH6 218 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 ADAM22Q9P0K1 906 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 STRIP2Q9ULQ0 834 aa21.73■■□□□ 1.07
CLN3-212ENST00000564574 TRANK1O15050 2925 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 XYLBO75191 536 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 GLP2RO95838 553 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 TKTL1P51854 596 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 SPA17Q15506 151 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 TAF12Q16514 161 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 MON1BQ7L1V2 547 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 GPRIN1Q7Z2K8 1008 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 ZDHHC17Q8IUH5 632 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 MYLIPQ8WY64 445 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 C18orf8Q96DM3 657 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 TRMT2BQ96GJ1 504 aaKnown RBP21.72■■□□□ 1.07
CLN3-212ENST00000564574 ZNF512Q96ME7 567 aaPredicted RBP21.72■■□□□ 1.07
CLN3-212ENST00000564574 PRKD2Q9BZL6 878 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 CNGB3Q9NQW8 809 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 SPTLC3Q9NUV7 552 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 TAS2R14Q9NYV8 317 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 WDR35Q9P2L0 1181 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 USP3Q9Y6I4 520 aa21.72■■□□□ 1.07
CLN3-212ENST00000564574 FAM92AA1XBS5 289 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 TMCO5BA8MYB1 307 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 E5RJQ4 531 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 SART1O43290 800 aaKnown RBP21.71■■□□□ 1.07
CLN3-212ENST00000564574 FTLP02792 175 aaPredicted RBP21.71■■□□□ 1.07
CLN3-212ENST00000564574 MYBL1P10243 752 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 LCP1P13796 627 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 HOXB8P17481 243 aaPredicted RBP21.71■■□□□ 1.07
CLN3-212ENST00000564574 YWHAQP27348 245 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 GSCP56915 257 aaPredicted RBP21.71■■□□□ 1.07
CLN3-212ENST00000564574 ADIGQ0VDE8 80 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 COL19A1Q14993 1142 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 ANKRD54Q6NXT1 300 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 MMS22LQ6ZRQ5 1243 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 MCOLN2Q8IZK6 566 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 MYRFLQ96LU7 910 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 GUCD1Q96NT3 240 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 C11orf70Q9BRQ4 267 aa21.71■■□□□ 1.07
CLN3-212ENST00000564574 UXTQ9UBK9 157 aaPredicted RBP21.71■■□□□ 1.07
CLN3-212ENST00000564574 RFPL2O75678 378 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 GABBR2O75899 941 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 ZBED1O96006 694 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 ERBB2P04626 1255 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 FOSL2P15408 326 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 KRT83P78385 493 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 PTP4A2Q12974 167 aa21.7■■□□□ 1.06
CLN3-212ENST00000564574 ZNF268Q14587 947 aaPredicted RBP21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms