RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ADGRB2O60241 1585 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 SPHKAPQ2M3C7 1700 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 ADCY10Q96PN6 1610 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PEX1O43933 1283 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 RALBP11234 206 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 ZNF23P17027 643 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PRKAA2P54646 552 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 ILF2Q12905 390 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 DENND5AQ6IQ26 1287 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 COPS6Q7L5N1 327 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 ARCQ7LC44 396 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 LSM14AQ8ND56 463 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 JDP2Q8WYK2 163 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 SLC13A1Q9BZW2 595 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 CACNA2D2Q9NY47 1150 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 GTSE1Q9NYZ3 720 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 MYH7BA7E2Y1 1941 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 ZNF701M0R085 212 aaPredicted RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 GLRA3O75311 464 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 GALCP54803 685 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 CDC16Q13042 620 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 RRP1BQ14684 758 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 TNFAIP8L3Q5GJ75 292 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 BSPRYQ5W0U4 402 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 KBTBD7Q8WVZ9 684 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 DCUN1D1Q96GG9 259 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PARVAQ9NVD7 372 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 VTI1BQ9UEU0 232 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 MYO1DO94832 1006 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 TYK2P29597 1187 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 EPC2Q52LR7 807 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 EAPPQ56P03 285 aaPredicted RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 NLRP10Q86W26 655 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 SHCBP1LQ9BZQ2 653 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 INTS2Q9H0H0 1204 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 PCYOX1Q9UHG3 505 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 MAP3K4Q9Y6R4 1608 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 SETBP1Q9Y6X0 1596 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 INO80B-WBP1J3KQ70 363 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 OXSR1O95747 527 aaPredicted RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 GRIK1P39086 918 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 CTDSPL2Q05D32 466 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 SQLEQ14534 574 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ZBED5Q49AG3 693 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 LMBRD2Q68DH5 695 aaPredicted RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 CENPSQ8N2Z9 138 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 PLBD2Q8NHP8 589 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 UCMAQ8WVF2 138 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 C1orf54Q8WWF1 131 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 GLG1Q92896 1179 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 WRNIP1Q96S55 665 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 PUS3Q9BZE2 481 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 DENND2AQ9ULE3 1009 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 A8MUI8 341 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 FAM47E-STBD1D6RA91 191 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 H6PDO95479 791 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 KCNQ4P56696 695 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ECT2LQ008S8 904 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ZNF568Q3ZCX4 644 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 EEF2KMTQ96G04 330 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 FAM111AQ96PZ2 611 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 NUDT12Q9BQG2 462 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 RTFDC1Q9BY42 306 aaPredicted RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 RSPH9Q9H1X1 276 aaPredicted RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 STXBP5LQ9Y2K9 1186 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 PRPF4O43172 522 aaKnown RBP eCLIP6.47□□□□□ -1.37
CLK3-212ENST00000563418 HLA-DPA1P20036 260 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 XPAP23025 273 aaPredicted RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 GTF2H1P32780 548 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 TALDO1P37837 337 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ERFP50548 548 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 OVGP1Q12889 678 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ACAP1Q15027 740 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 PKN2Q16513 984 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 KIAA0408Q6ZU52 694 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 PALB2Q86YC2 1186 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 SDR16C5Q8N3Y7 309 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 HELQQ8TDG4 1101 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 YIPF2Q9BWQ6 316 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ERBB3P21860 1342 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 PSMD11O00231 422 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 RNMTO43148 476 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 MED7O43513 233 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 IFNA7P01567 189 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 NR3C1P04150 777 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 RPS6P62753 249 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 SPIRE1Q08AE8 756 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ANKRD40Q6AI12 368 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 GALNT18Q6P9A2 607 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 FBXL16Q8N461 479 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 LEMD2Q8NC56 503 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 POLR1BQ9H9Y6 1135 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 ZNF304Q9HCX3 659 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 TMEM98Q9Y2Y6 226 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 CDC42BPGQ6DT37 1551 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 CCRL2O00421 344 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 TLR2O60603 784 aa6.47□□□□□ -1.37
CLK3-212ENST00000563418 EDF1O60869 148 aaKnown RBP6.47□□□□□ -1.37
CLK3-212ENST00000563418 PLIN5Q00G26 463 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms