RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ST7Q9NRC1 585 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 LMCD1Q9NZU5 365 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 MTCH2Q9Y6C9 303 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.49■□□□□ 0.39
VPS4A-202ENST00000562754 POU3F3P20264 500 aaPredicted RBP17.48■□□□□ 0.39
VPS4A-202ENST00000562754 SLC5A3P53794 718 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 USP46P62068 366 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 C1QBPQ07021 282 aaKnown RBP17.48■□□□□ 0.39
VPS4A-202ENST00000562754 TWF1Q12792 350 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 MTMR3Q13615 1198 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 CYP4A22Q5TCH4 519 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 LIN9Q5TKA1 542 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 CCDC149Q6ZUS6 474 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 TMEM110Q86TL2 294 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 MCOLN2Q8IZK6 566 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 SCAMP5Q8TAC9 235 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 GIPC2Q8TF65 315 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 ADAM22Q9P0K1 906 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 PYCARDQ9ULZ3 195 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 ADGRG1Q9Y653 693 aa17.48■□□□□ 0.39
VPS4A-202ENST00000562754 NCANO14594 1321 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 SLC38A8A6NNN8 435 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 PAPSS1O43252 624 aaPredicted RBP17.47■□□□□ 0.39
VPS4A-202ENST00000562754 ATMINO43313 823 aaPredicted RBP17.47■□□□□ 0.39
VPS4A-202ENST00000562754 ZMYND10O75800 440 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 GLP2RO95838 553 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 LCP1P13796 627 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 ACADSBP45954 432 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 GABRB2P47870 512 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 TKTL1P51854 596 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 GALCP54803 685 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 PPP1R2P3Q6NXS1 205 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 Q7L0L9 218 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 XYLT1Q86Y38 959 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 FEZF2Q8TBJ5 459 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 IPO4Q8TEX9 1081 aaKnown RBP17.47■□□□□ 0.39
VPS4A-202ENST00000562754 HDAC7Q8WUI4 952 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 PPP2R3CQ969Q6 453 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 PIWIL1Q96J94 861 aaKnown RBP17.47■□□□□ 0.39
VPS4A-202ENST00000562754 ULBP1Q9BZM6 244 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 PLEKHA4Q9H4M7 779 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 LRRC4Q9HBW1 653 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 TFR2Q9UP52 801 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 PCDHA13Q9Y5I0 950 aa17.47■□□□□ 0.39
VPS4A-202ENST00000562754 A0A0U1RQJ8 604 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 RCCD1A6NED2 376 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 LINC01565O15544 149 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 RFPL2O75678 378 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 CALB1P05937 261 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 H2AFZP0C0S5 128 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 ABCB4P21439 1286 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 MAGEA1P43355 309 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 ALDH1A3P47895 512 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 SPA17Q15506 151 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 PPM1LQ5SGD2 360 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 FAM183BPQ6ZVS7 135 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 H2AFVQ71UI9 128 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 BHLHA9Q7RTU4 235 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 PHLDB2Q86SQ0 1253 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 NUP93Q8N1F7 819 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 SIX6OS1Q8N1H7 587 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 EFHBQ8N7U6 833 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 MSANTD4Q8NCY6 345 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 CLEC4CQ8WTT0 213 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 ATRIPQ8WXE1 791 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 NDRG1Q92597 394 aaKnown RBP17.46■□□□□ 0.39
VPS4A-202ENST00000562754 ZNF653Q96CK0 615 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 C18orf8Q96DM3 657 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 ARHGEF26Q96DR7 871 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 CEP295NLQ96MC4 621 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 THAP2Q9H0W7 228 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 IGFLR1Q9H665 355 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 SYNCQ9H7C4 482 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 IL37Q9NZH6 218 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 USP3Q9Y6I4 520 aa17.46■□□□□ 0.39
VPS4A-202ENST00000562754 OBSL1O75147 1896 aa17.46■□□□□ 0.38
VPS4A-202ENST00000562754 DOCK6Q96HP0 2047 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 TCRBV5S1A1TA0A578 114 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 ANKRD62A6NC57 917 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 IPO7O95373 1038 aaKnown RBP17.45■□□□□ 0.38
VPS4A-202ENST00000562754 LRG1P02750 347 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 HMGA1P17096 107 aaKnown RBP17.45■□□□□ 0.38
VPS4A-202ENST00000562754 RRM1P23921 792 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 HOXA9P31269 272 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 EPHB3P54753 998 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 GSCP56915 257 aaPredicted RBP17.45■□□□□ 0.38
VPS4A-202ENST00000562754 IFRD2Q12894 506 aaPredicted RBP17.45■□□□□ 0.38
VPS4A-202ENST00000562754 PLD1Q13393 1074 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 C10orf76Q5T2E6 689 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 GPR153Q6NV75 609 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 OLFML1Q6UWY5 402 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 DENND5BQ6ZUT9 1274 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 RTL10Q7L3V2 364 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 VCPIP1Q96JH7 1222 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 TTLL2Q9BWV7 592 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 MIS12Q9H081 205 aa17.45■□□□□ 0.38
VPS4A-202ENST00000562754 CHORDC1Q9UHD1 332 aaPredicted RBP17.45■□□□□ 0.38
VPS4A-202ENST00000562754 C2orf16Q68DN1 1984 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 CDH23Q9H251 3354 aa17.44■□□□□ 0.38
VPS4A-202ENST00000562754 FAM92AA1XBS5 289 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms