RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 SERPINC1P01008 464 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 GJA1P17302 382 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 GNA15P30679 374 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 PLA2G4AP47712 749 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 TUBP50607 506 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 BPIFB4P59827 614 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 USP46P62068 366 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 APBA1Q02410 837 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 PTK2Q05397 1052 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 RAPGEF1Q13905 1077 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 SYCP1Q15431 976 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 PKDCCQ504Y2 493 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 FAM78AQ5JUQ0 283 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 SNX30Q5VWJ9 437 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 TTC30AQ86WT1 665 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 FMNL3Q8IVF7 1028 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 FAM71AQ8IYT1 594 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 PIAS4Q8N2W9 510 aaPredicted RBP13.73□□□□□ -0.21
NEDD8-208ENST00000560427 STKLD1Q8NE28 680 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 DEPDC1BQ8WUY9 529 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 TFAP2BQ92481 460 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 GANQ9H2C0 597 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 KIF9Q9HAQ2 790 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 ZFP14Q9HCL3 533 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 RTN4Q9NQC3 1192 aaKnown RBP13.73□□□□□ -0.21
NEDD8-208ENST00000560427 MUTYHQ9UIF7 546 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 SCML2Q9UQR0 700 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 FHOD1Q9Y613 1164 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 NUMBLQ9Y6R0 609 aa13.73□□□□□ -0.21
NEDD8-208ENST00000560427 TRAV19A0A0A6YYK7 116 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 ZNF840PA6NDX5 716 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 F8VZ95 297 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 NRG2O14511 850 aaPredicted RBP13.72□□□□□ -0.21
NEDD8-208ENST00000560427 FCARP24071 287 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 BRD2P25440 801 aaKnown RBP13.72□□□□□ -0.21
NEDD8-208ENST00000560427 AVPR1AP37288 418 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 PSEN1P49768 467 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 KIF11P52732 1056 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 CYP4F8P98187 520 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 PDE4CQ08493 712 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 TAF10Q12962 218 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 ZNF268Q14587 947 aaPredicted RBP13.72□□□□□ -0.21
NEDD8-208ENST00000560427 DRAP1Q14919 205 aaPredicted RBP13.72□□□□□ -0.21
NEDD8-208ENST00000560427 RAB41Q5JT25 222 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 PARM1Q6UWI2 310 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 CCDC186Q7Z3E2 898 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 PIGZQ86VD9 579 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 CMTM8Q8IZV2 173 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 NEK11Q8NG66 645 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 SCAMP5Q8TAC9 235 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 KCTD13Q8WZ19 329 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 FGF14Q92915 247 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 PCMTD1Q96MG8 357 aaPredicted RBP13.72□□□□□ -0.21
NEDD8-208ENST00000560427 FAM207AQ9NSI2 230 aaPredicted RBP13.72□□□□□ -0.21
NEDD8-208ENST00000560427 DUSP12Q9UNI6 340 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 USP3Q9Y6I4 520 aa13.72□□□□□ -0.21
NEDD8-208ENST00000560427 BDP1A6H8Y1 2624 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 GREB1Q4ZG55 1949 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 PI4K2BG5E9Z4 385 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 M0QYV0 167 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 FOXN3O00409 490 aaPredicted RBP13.71□□□□□ -0.21
NEDD8-208ENST00000560427 THAP12O43422 761 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 OLFM2O95897 454 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 ASGR2P07307 311 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 USP17L7P0C7H9 530 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 ZDHHC11BP0C7U3 371 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 SRFP11831 508 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 TCF3P15923 654 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 USP8P40818 1118 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 STXBP5Q5T5C0 1151 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 SCML4Q8N228 414 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 ARHGAP18Q8N392 663 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 SLC44A3Q8N4M1 653 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 CELF5Q8N6W0 485 aaKnown RBP13.71□□□□□ -0.21
NEDD8-208ENST00000560427 KIAA1958Q8N8K9 716 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 ZNF606Q8WXB4 792 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 HSFY1Q96LI6 401 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 ZSWIM3Q96MP5 696 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 ZSWIM1Q9BR11 485 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 SLC46A2Q9BY10 475 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 SLC2A4RGQ9NR83 387 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 TLR8Q9NR97 1041 aaKnown RBP13.71□□□□□ -0.21
NEDD8-208ENST00000560427 AJAP1Q9UKB5 411 aaPredicted RBP13.71□□□□□ -0.21
NEDD8-208ENST00000560427 PCDHGC3Q9UN70 934 aa13.71□□□□□ -0.21
NEDD8-208ENST00000560427 NUP210Q8TEM1 1887 aaPredicted RBP13.7□□□□□ -0.22
NEDD8-208ENST00000560427 DOCK6Q96HP0 2047 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 DLL1O00548 723 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 DPYSL4O14531 572 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 CYP26A1O43174 497 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 OAS1P00973 400 aaKnown RBP13.7□□□□□ -0.22
NEDD8-208ENST00000560427 TPM3P06753 285 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 PSMC3P17980 439 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 KLK7P49862 253 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 JAM2P57087 298 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 POLR2FP61218 127 aaKnown RBP13.7□□□□□ -0.22
NEDD8-208ENST00000560427 ZXDAP98168 799 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 FANCCQ00597 558 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 PFKPQ01813 784 aa13.7□□□□□ -0.22
NEDD8-208ENST00000560427 IFRD2Q12894 506 aaPredicted RBP13.7□□□□□ -0.22
NEDD8-208ENST00000560427 TXNDC8Q6A555 127 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms