RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 RTN3O95197 1032 aaPredicted RBP9.04□□□□□ -0.96
USP3-217ENST00000560070 PRAMEF12O95522 483 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 FCARP24071 287 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 GDI1P31150 447 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 AVPR1AP37288 418 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 GCNT1Q02742 428 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 UBXN1Q04323 297 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 PDE4CQ08493 712 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 RAPGEF1Q13905 1077 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 CNGA2Q16280 664 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 TMEM31Q5JXX7 168 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 FKBP15Q5T1M5 1219 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 ARHGAP17Q68EM7 881 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 DENND1BQ6P3S1 775 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 VITQ6UXI7 678 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 MAMSTRQ6ZN01 415 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 LUZP1Q86V48 1076 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 TTC30AQ86WT1 665 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 UBALD2Q8IYN6 164 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 SIX5Q8N196 739 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 ANKRD52Q8NB46 1076 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 USP13Q92995 863 aaPredicted RBP9.04□□□□□ -0.96
USP3-217ENST00000560070 NXPE3Q969Y0 559 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 PBXIP1Q96AQ6 731 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 ELSPBP1Q96BH3 223 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 TRMT2BQ96GJ1 504 aaKnown RBP9.04□□□□□ -0.96
USP3-217ENST00000560070 ZFYVE19Q96K21 471 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 MYRFLQ96LU7 910 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 SLITRK1Q96PX8 696 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 ZSWIM1Q9BR11 485 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 FUCA2Q9BTY2 467 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 TRMT61BQ9BVS5 477 aaKnown RBP9.04□□□□□ -0.96
USP3-217ENST00000560070 RNF38Q9H0F5 515 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 BRD9Q9H8M2 597 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 CBX8Q9HC52 389 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 CSNK1G1Q9HCP0 422 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 GKN1Q9NS71 199 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 SMPD4Q9NXE4 827 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 APEX2Q9UBZ4 518 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 LIMA1Q9UHB6 759 aaKnown RBP9.04□□□□□ -0.96
USP3-217ENST00000560070 NUDT5Q9UKK9 219 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 CCL26Q9Y258 94 aa9.04□□□□□ -0.96
USP3-217ENST00000560070 TDRD15B5MCY1 1934 aaKnown RBP9.03□□□□□ -0.96
USP3-217ENST00000560070 REV3LO60673 3130 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 TRAV19A0A0A6YYK7 116 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 A0A1W2PQH9 124 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 GTPBP10A4D1E9 387 aaKnown RBP9.03□□□□□ -0.96
USP3-217ENST00000560070 M0QYV0 167 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 O00370 1275 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 TBX18O95935 607 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 CKMP06732 381 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 PAEPP09466 180 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 USP17L7P0C7H9 530 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 SRFP11831 508 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 LCP1P13796 627 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 NPR3P17342 541 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 CD72P21854 359 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 RFX1P22670 979 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 SLC8A3P57103 927 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 SIGLEC14Q08ET2 396 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 DRAP1Q14919 205 aaPredicted RBP9.03□□□□□ -0.96
USP3-217ENST00000560070 IQCB1Q15051 598 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 SYCP1Q15431 976 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 SLC44A4Q53GD3 710 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 KLHDC7AQ5VTJ3 777 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 PIGZQ86VD9 579 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 MFSD6LQ8IWD5 586 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 SECISBP2LQ93073 1101 aaKnown RBP9.03□□□□□ -0.96
USP3-217ENST00000560070 PHF12Q96QT6 1004 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 LRFN3Q9BTN0 628 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 TTLL2Q9BWV7 592 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 C1QTNF1Q9BXJ1 281 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 NACA2Q9H009 215 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 MIS12Q9H081 205 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 HSD3B7Q9H2F3 369 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 MFSD1Q9H3U5 465 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 CCSER2Q9H7U1 834 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 NLRC4Q9NPP4 1024 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 FAM207AQ9NSI2 230 aaPredicted RBP9.03□□□□□ -0.96
USP3-217ENST00000560070 TDP1Q9NUW8 608 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 EHD2Q9NZN4 543 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 KIAA1257Q9ULG3 409 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 DUSP12Q9UNI6 340 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 FHOD1Q9Y613 1164 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 NCANO14594 1321 aa9.03□□□□□ -0.96
USP3-217ENST00000560070 KRBA1A5PL33 1030 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 MDM4O15151 490 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 TEX33O43247 280 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 SERPINC1P01008 464 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 HMBSP08397 361 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 IRF1P10914 325 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 MBL2P11226 248 aaPredicted RBP9.02□□□□□ -0.97
USP3-217ENST00000560070 ZNF18P17022 549 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 PSMC3P17980 439 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 DDX6P26196 483 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP3-217ENST00000560070 GNA15P30679 374 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 TKTL1P51854 596 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 KPNA1P52294 538 aaPredicted RBP9.02□□□□□ -0.97
USP3-217ENST00000560070 KIF11P52732 1056 aa9.02□□□□□ -0.97
USP3-217ENST00000560070 POLR2FP61218 127 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms