RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 TAF10Q12962 218 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 CSRP2Q16527 193 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 SGSM1Q2NKQ1 1148 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 TMC2Q8TDI7 906 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 GAB3Q8WWW8 586 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 TAF4BQ92750 862 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 CHFRQ96EP1 664 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 CCDC34Q96HJ3 373 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 LOXL4Q96JB6 756 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 RTKNQ9BST9 563 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 MED10Q9BTT4 135 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 B3GNT5Q9BYG0 378 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 IMPG2Q9BZV3 1241 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 ZNF518BQ9C0D4 1074 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 DPEP3Q9H4B8 488 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 SMYD3Q9H7B4 428 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 DMAP1Q9NPF5 467 aaPredicted RBP13.04□□□□□ -0.32
SPG11-219ENST00000559822 C2orf42Q9NWW7 574 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 NME7Q9Y5B8 376 aa13.04□□□□□ -0.32
SPG11-219ENST00000559822 IKBKBO14920 756 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 MAPK13O15264 365 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 RPP40O75818 363 aaKnown RBP13.03□□□□□ -0.32
SPG11-219ENST00000559822 OLFM2O95897 454 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 C4BPAP04003 597 aaKnown RBP13.03□□□□□ -0.32
SPG11-219ENST00000559822 CCDC192P0DO97 292 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 IFRD2Q12894 506 aaPredicted RBP13.03□□□□□ -0.32
SPG11-219ENST00000559822 SRSF5Q13243 272 aaKnown RBP13.03□□□□□ -0.32
SPG11-219ENST00000559822 PKN3Q6P5Z2 889 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 SCARA5Q6ZMJ2 495 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 SYT13Q7L8C5 426 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 CACNA2D4Q7Z3S7 1137 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 PLEKHO2Q8TD55 490 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 NETO1Q8TDF5 533 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 FBXO32Q969P5 355 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 SMARCD1Q96GM5 515 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 DNAI2Q9GZS0 605 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 SCAND2PQ9GZW5 306 aaPredicted RBP13.03□□□□□ -0.32
SPG11-219ENST00000559822 KCTD10Q9H3F6 313 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 PARD6AQ9NPB6 346 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 SEMA4GQ9NTN9 838 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 COMMD8Q9NX08 183 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 HPSEQ9Y251 543 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 CPQQ9Y646 472 aa13.03□□□□□ -0.32
SPG11-219ENST00000559822 CLDN5O00501 218 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 APBB3O95704 486 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 ADH1CP00326 375 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 OAS1P00973 400 aaKnown RBP13.02□□□□□ -0.33
SPG11-219ENST00000559822 MBL2P11226 248 aaPredicted RBP13.02□□□□□ -0.33
SPG11-219ENST00000559822 CDH8P55286 799 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 ZACNQ401N2 412 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 CEP135Q66GS9 1140 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 PRR23CQ6ZRP0 262 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 FAM35AQ86V20 835 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 UNC93AQ86WB7 457 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 FAM160A2Q8N612 972 aaPredicted RBP13.02□□□□□ -0.33
SPG11-219ENST00000559822 RPLP0P6Q8NHW5 317 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 FBRSL1Q9HCM7 1045 aaKnown RBP13.02□□□□□ -0.33
SPG11-219ENST00000559822 TBC1D14Q9P2M4 693 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 TRAF3IP3Q9Y228 551 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 FRYLO94915 3013 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 DCHS1Q96JQ0 3298 aa13.02□□□□□ -0.33
SPG11-219ENST00000559822 DMXL1Q9Y485 3027 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 FAM237AA0A1B0GTK4 181 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 AXIN1O15169 862 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 RHOBTB3O94955 611 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 VNN1O95497 513 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 ASS1P00966 412 aaKnown RBP13.01□□□□□ -0.33
SPG11-219ENST00000559822 KRT13P13646 458 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 RPL13P26373 211 aaKnown RBP13.01□□□□□ -0.33
SPG11-219ENST00000559822 EIF2DP41214 584 aaKnown RBP13.01□□□□□ -0.33
SPG11-219ENST00000559822 PIK3CAP42336 1068 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 RAP1GAPP47736 663 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 TUBP50607 506 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 SLC5A3P53794 718 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 ATXN1P54253 815 aaKnown RBP13.01□□□□□ -0.33
SPG11-219ENST00000559822 CACNA2D1P54289 1103 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 ENPEPQ07075 957 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 DMC1Q14565 340 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 NFIL3Q16649 462 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 HECTD3Q5T447 861 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 INTS8Q75QN2 995 aaKnown RBP13.01□□□□□ -0.33
SPG11-219ENST00000559822 FILIP1Q7Z7B0 1213 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 CCDC150Q8NCX0 1101 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 OTUB2Q96DC9 234 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 HHIPQ96QV1 700 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 RNF38Q9H0F5 515 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 LINC00597Q9H2U6 94 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 FBXO44Q9H4M3 255 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 KRT82Q9NSB4 513 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 TMEM30AQ9NV96 361 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 SMPD4Q9NXE4 827 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 CFAP97Q9P2B7 532 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 PCDHGA5Q9Y5G8 931 aa13.01□□□□□ -0.33
SPG11-219ENST00000559822 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.01□□□□□ -0.33
SPG11-219ENST00000559822 A0A1W2PQ27 194 aa13□□□□□ -0.33
SPG11-219ENST00000559822 A0A1W2PQ64 194 aa13□□□□□ -0.33
SPG11-219ENST00000559822 A0A1W2PQD8 194 aa13□□□□□ -0.33
SPG11-219ENST00000559822 E2F8A0AVK6 867 aa13□□□□□ -0.33
SPG11-219ENST00000559822 MED19A0JLT2 244 aaPredicted RBP13□□□□□ -0.33
SPG11-219ENST00000559822 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms