RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 RASSF3Q86WH2 238 aa13.97□□□□□ -0.17
TPM1-220ENST00000559556 ZNF507Q8TCN5 953 aa13.97□□□□□ -0.17
TPM1-220ENST00000559556 TCEAL3Q969E4 200 aa13.97□□□□□ -0.17
TPM1-220ENST00000559556 C8orf48Q96LL4 319 aa13.97□□□□□ -0.17
TPM1-220ENST00000559556 MMS19Q96T76 1030 aa13.97□□□□□ -0.17
TPM1-220ENST00000559556 CGRRF1Q99675 332 aa13.97□□□□□ -0.17
TPM1-220ENST00000559556 LSM14BQ9BX40 385 aaKnown RBP13.97□□□□□ -0.17
TPM1-220ENST00000559556 LRRC27Q9C0I9 530 aa13.97□□□□□ -0.17
TPM1-220ENST00000559556 TMEM30AQ9NV96 361 aa13.97□□□□□ -0.17
TPM1-220ENST00000559556 ANGPTL2Q9UKU9 493 aa13.97□□□□□ -0.17
TPM1-220ENST00000559556 MMP17Q9ULZ9 603 aa13.97□□□□□ -0.17
TPM1-220ENST00000559556 GOLGA4Q13439 2230 aaKnown RBP13.96□□□□□ -0.17
TPM1-220ENST00000559556 PLXNB3Q9ULL4 1909 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 ZNF840PA6NDX5 716 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 F8VP50 259 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 TGFB1I1O43294 461 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 FAM163BP0C2L3 166 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 CHRM1P11229 460 aaPredicted RBP13.96□□□□□ -0.17
TPM1-220ENST00000559556 DGKEP52429 567 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 CYP24A1Q07973 514 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 FAM26FQ5R3K3 315 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 PMS2CLQ68D20 193 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 RNF43Q68DV7 783 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 FILIP1Q7Z7B0 1213 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 C11orf74Q86VG3 221 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 LINC00301Q8NCQ3 95 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 TSTD1Q8NFU3 115 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 CNOT6LQ96LI5 555 aaKnown RBP13.96□□□□□ -0.17
TPM1-220ENST00000559556 MRPL45Q9BRJ2 306 aaKnown RBP13.96□□□□□ -0.17
TPM1-220ENST00000559556 EDEM2Q9BV94 578 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 ELOVL4Q9GZR5 314 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 RNF38Q9H0F5 515 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 AGPAT3Q9NRZ7 376 aa13.96□□□□□ -0.17
TPM1-220ENST00000559556 LNP1A1A4G5 178 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 SLC9A3R1O14745 358 aaPredicted RBP13.95□□□□□ -0.18
TPM1-220ENST00000559556 STX6O43752 255 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 PPP6R2O75170 966 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 KCNK5O95279 499 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 STAU1O95793 577 aaKnown RBP13.95□□□□□ -0.18
TPM1-220ENST00000559556 CAVIN2O95810 425 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 CST3P01034 146 aaPredicted RBP13.95□□□□□ -0.18
TPM1-220ENST00000559556 DLATP10515 647 aaKnown RBP13.95□□□□□ -0.18
TPM1-220ENST00000559556 TNNI1P19237 187 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 GNL1P36915 607 aaPredicted RBP13.95□□□□□ -0.18
TPM1-220ENST00000559556 EIF2DP41214 584 aaKnown RBP13.95□□□□□ -0.18
TPM1-220ENST00000559556 CACNA2D1P54289 1103 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 SNRPFP62306 86 aaKnown RBP13.95□□□□□ -0.18
TPM1-220ENST00000559556 MRPS21P82921 87 aaKnown RBP13.95□□□□□ -0.18
TPM1-220ENST00000559556 CREB5Q02930 508 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 EHHADHQ08426 723 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 PSMD6Q15008 389 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 STK38Q15208 465 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 USP39Q53GS9 565 aaKnown RBP13.95□□□□□ -0.18
TPM1-220ENST00000559556 C2orf27AQ580R0 203 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 SLITRK1Q96PX8 696 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 FNBP1Q96RU3 617 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 TPSD1Q9BZJ3 242 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 SNX25Q9H3E2 840 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 CPQQ9Y646 472 aa13.95□□□□□ -0.18
TPM1-220ENST00000559556 FASNP49327 2511 aaKnown RBP13.95□□□□□ -0.18
TPM1-220ENST00000559556 SPTLC2O15270 562 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 PTPN1P18031 435 aaKnown RBP13.94□□□□□ -0.18
TPM1-220ENST00000559556 GBP1P32455 592 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 SEC13P55735 322 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 TNNC1P63316 161 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 ASIC1P78348 528 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 AMPD3Q01432 767 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 TAF10Q12962 218 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 DHCR24Q15392 516 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 CRY1Q16526 586 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 WDR72Q3MJ13 1102 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 HSF5Q4G112 596 aaPredicted RBP13.94□□□□□ -0.18
TPM1-220ENST00000559556 HS2ST1Q7LGA3 356 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 DDX42Q86XP3 938 aaKnown RBP eCLIP13.94□□□□□ -0.18
TPM1-220ENST00000559556 ADGRG2Q8IZP9 1017 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 XXYLT1Q8NBI6 393 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 B3GALNT2Q8NCR0 500 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 MDGA1Q8NFP4 955 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 OLIG1Q8TAK6 271 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 CHAMP1Q96JM3 812 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 ZNF518BQ9C0D4 1074 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 GZF1Q9H116 711 aaPredicted RBP13.94□□□□□ -0.18
TPM1-220ENST00000559556 XYLT2Q9H1B5 865 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 DPEP3Q9H4B8 488 aa13.94□□□□□ -0.18
TPM1-220ENST00000559556 ANTXRLA6NF34 631 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 RTN3O95197 1032 aaPredicted RBP13.93□□□□□ -0.18
TPM1-220ENST00000559556 BCKDHBP21953 392 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 CYP2J2P51589 502 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 MESP2Q0VG99 397 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 BMT2Q1RMZ1 405 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 TDRD10Q5VZ19 366 aaKnown RBP13.93□□□□□ -0.18
TPM1-220ENST00000559556 ANO7Q6IWH7 933 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 PSAPL1Q6NUJ1 521 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 TMEM92Q6UXU6 159 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 SFTPA1Q8IWL2 248 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 C12orf56Q8IXR9 622 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 RDH13Q8NBN7 331 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 PDZD8Q8NEN9 1154 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 OR6B3Q8NGW1 331 aa13.93□□□□□ -0.18
TPM1-220ENST00000559556 SCFD1Q8WVM8 642 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms