RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SPATA31D4Q6ZUB0 917 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 NIM1KQ8IY84 436 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 WDTC1Q8N5D0 677 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 ENDOVQ8N8Q3 282 aaKnown RBP12.89□□□□□ -0.35
LDLR-205ENST00000557933 FGD4Q96M96 766 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 SRPK1Q96SB4 655 aaKnown RBP12.89□□□□□ -0.35
LDLR-205ENST00000557933 APOL6Q9BWW8 343 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 RNF19AQ9NV58 838 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 CYTH4Q9UIA0 394 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 MYOCOSA0A1B0GUC4 107 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 ABHD2P08910 425 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 CDK16Q00536 496 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 WASHC2DQ5SRD0 308 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 DENND1BQ6P3S1 775 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 RAPH1Q70E73 1250 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 THNSL1Q8IYQ7 743 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 RCOR2Q8IZ40 523 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 PDIK1LQ8N165 341 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 SPATA18Q8TC71 538 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 ATXN7L3BQ96GX2 97 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 ZBED3Q96IU2 234 aaPredicted RBP12.89□□□□□ -0.35
LDLR-205ENST00000557933 PIWIL1Q96J94 861 aaKnown RBP12.89□□□□□ -0.35
LDLR-205ENST00000557933 PDCD2LQ9BRP1 358 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 IP6K2Q9UHH9 426 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 UBIAD1Q9Y5Z9 338 aa12.89□□□□□ -0.35
LDLR-205ENST00000557933 ICAM1P05362 532 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 POTEJP0CG39 1038 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 SRGAP2CP0DJJ0 459 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 ACADSP16219 412 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 MMP8P22894 467 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 GRIA1P42261 906 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 EIF3EP60228 445 aaKnown RBP12.88□□□□□ -0.35
LDLR-205ENST00000557933 VWA5B1Q5TIE3 1220 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 SCYL2Q6P3W7 929 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 TRMT10BQ6PF06 316 aaKnown RBP12.88□□□□□ -0.35
LDLR-205ENST00000557933 C4orf19Q8IY42 314 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 KCTD6Q8NC69 237 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 RBM41Q96IZ5 413 aaKnown RBP12.88□□□□□ -0.35
LDLR-205ENST00000557933 TTC25Q96NG3 672 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 PANX3Q96QZ0 392 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.88□□□□□ -0.35
LDLR-205ENST00000557933 MAP3K7O43318 606 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 LRCH4O75427 683 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 TOM1L1O75674 476 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 ZWINTO95229 277 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 APRTP07741 180 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 SKIP12755 728 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 HSD17B4P51659 736 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 DLGAP5Q15398 846 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 C15orf59Q2T9L4 293 aaPredicted RBP12.88□□□□□ -0.35
LDLR-205ENST00000557933 PTPN20Q4JDL3 420 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 SPNS2Q8IVW8 549 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 LARGE2Q8N3Y3 721 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 CEP41Q9BYV8 373 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 RAB6BQ9NRW1 208 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 ZNF70Q9UC06 446 aaPredicted RBP12.88□□□□□ -0.35
LDLR-205ENST00000557933 HMGXB4Q9UGU5 601 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 PCDHA10Q9Y5I2 948 aa12.88□□□□□ -0.35
LDLR-205ENST00000557933 H7C0C1 242 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 K7ERI5 159 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 FZD9O00144 591 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 COPEO14579 308 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 EGFRP00533 1210 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 ABCG1P45844 678 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 ATP5OP48047 213 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 PGGT1BP53609 377 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 RBBP5Q15291 538 aaKnown RBP12.87□□□□□ -0.35
LDLR-205ENST00000557933 TCHHL1Q5QJ38 904 aaPredicted RBP12.87□□□□□ -0.35
LDLR-205ENST00000557933 DARS2Q6PI48 645 aaKnown RBP12.87□□□□□ -0.35
LDLR-205ENST00000557933 PPFIBP2Q8ND30 876 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 TMC2Q8TDI7 906 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 MZB1Q8WU39 189 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 ATG4CQ96DT6 458 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 FAM81BQ96LP2 452 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 FBXL18Q96ME1 805 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 IWS1Q96ST2 819 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 ACSS3Q9H6R3 686 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 CISHQ9NSE2 258 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 ENTPD3O75355 529 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 STAM2O75886 525 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 OR6B1O95007 311 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 ADGRD1Q6QNK2 874 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 RGS9BPQ6ZS82 235 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 DENND5BQ6ZUT9 1274 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 PPIL6Q8IXY8 311 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 RIBC1Q8N443 379 aaPredicted RBP12.87□□□□□ -0.35
LDLR-205ENST00000557933 UBA3Q8TBC4 463 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 SKA1Q96BD8 255 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 GBP5Q96PP8 586 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 EBF3Q9H4W6 596 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 PCDH9Q9HC56 1237 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 ZNF277Q9NRM2 450 aaPredicted RBP12.87□□□□□ -0.35
LDLR-205ENST00000557933 SLC7A8Q9UHI5 535 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 LRCH1Q9Y2L9 728 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 FARP1Q9Y4F1 1045 aaPredicted RBP12.87□□□□□ -0.35
LDLR-205ENST00000557933 SCINQ9Y6U3 715 aa12.87□□□□□ -0.35
LDLR-205ENST00000557933 OPHN1O60890 802 aa12.86□□□□□ -0.35
LDLR-205ENST00000557933 RNASEH1O60930 286 aaKnown RBP12.86□□□□□ -0.35
LDLR-205ENST00000557933 C6orf222P0C671 652 aaPredicted RBP12.86□□□□□ -0.35
LDLR-205ENST00000557933 KCNA4P22459 653 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms