RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 POMGNT1Q8WZA1 660 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 MYLPFQ96A32 169 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 FUBP3Q96I24 572 aaKnown RBP eCLIP8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 CAMK1GQ96NX5 476 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 CHMP5Q9NZZ3 219 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 AGAP1Q9UPQ3 857 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 NYNRINQ9P2P1 1898 aaKnown RBP8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 H0Y626 953 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 GABRDO14764 452 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 OPHN1O60890 802 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 PPP1R37O75864 691 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 IL18RAPO95256 599 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 TRIM16O95361 564 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 APODP05090 189 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 KRT18P05783 430 aaKnown RBP8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 GABRG2P18507 467 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 PLCG1P19174 1290 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 HOXD12P35452 270 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 MAGEA11P43364 429 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SLC7A9P82251 487 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 POU5F1Q01860 360 aaKnown RBP8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 GRIN1Q05586 938 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 KCNA1Q09470 495 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SCAPQ12770 1279 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 RESTQ13127 1097 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 DUOXA1Q1HG43 343 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SOWAHAQ2M3V2 549 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 COL28A1Q2UY09 1125 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 HSF5Q4G112 596 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 RILPL1Q5EBL4 403 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 EOGTQ5NDL2 527 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SLFN12LQ6IEE8 588 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 FAM171BQ6P995 826 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 RHBDF2Q6PJF5 856 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SFR1Q86XK3 245 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 NT5DC4Q86YG4 428 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 BRSK2Q8IWQ3 736 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 TMEM86AQ8N2M4 240 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 LRRC52Q8N7C0 313 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 FSIP1Q8NA03 581 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 KBTBD7Q8WVZ9 684 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 RAD54LQ92698 747 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SAAL1Q96ER3 474 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 BBC3Q96PG8 261 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 PNKPQ96T60 521 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SYT15Q9BQS2 421 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 FAM213AQ9BRX8 229 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 MTMR12Q9C0I1 747 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 RNF38Q9H0F5 515 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 ST6GALNAC4Q9H4F1 302 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 POLMQ9NP87 494 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 CRTAC1Q9NQ79 661 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 ARHGEF4Q9NR80 690 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SMPD4Q9NXE4 827 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 GDAP2Q9NXN4 497 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 CALCOCO1Q9P1Z2 691 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SIX4Q9UIU6 781 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 HCN2Q9UL51 889 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SLC6A14Q9UN76 642 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 SNX9Q9Y5X1 595 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 CPQQ9Y646 472 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 PLXNA2O75051 1894 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 PTPRJQ12913 1337 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 NAV2Q8IVL1 2488 aa8.74□□□□□ -1.01
CCDC88C-214ENST00000557507 IGHV1OR15-9A0A0B4J2B8 117 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 ZNF840PA6NDX5 716 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 MYMKA6NI61 221 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 TULP1O00294 542 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 AP5Z1O43299 807 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 OAS1P00973 400 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 SERPINF2P08697 491 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 FTH1P19P0C7X4 201 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 ADH5P11766 374 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 PDIA4P13667 645 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 PFKLP17858 780 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 BDNFP23560 247 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 LMO2P25791 158 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 PCSK1P29120 753 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 DDIT3P35638 169 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 EIF2DP41214 584 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 DPP6P42658 865 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 PDE6CP51160 858 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 ATXN3P54252 364 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 RPL6Q02878 288 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 GFPT1Q06210 699 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 ZNF33AQ06730 810 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 ZNF423Q2M1K9 1284 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 SPDYCQ5MJ68 293 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 ARL6IP4Q66PJ3 421 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 MCTP1Q6DN14 999 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 DENND5BQ6ZUT9 1274 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 MIB1Q86YT6 1006 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 SLC41A1Q8IVJ1 513 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 ADGRG2Q8IZP9 1017 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 PGBD3Q8N328 593 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 TOP6BLQ8N6T0 577 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 PNPLA1Q8N8W4 532 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 ERLEC1Q96DZ1 483 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 CALML4Q96GE6 196 aa8.73□□□□□ -1.01
CCDC88C-214ENST00000557507 SPATA17Q96L03 361 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms