RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 SPATA31C2B4DYI2 1134 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 LRCH4O75427 683 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 IL1R2P27930 398 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 PGM1P36871 562 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 MTFR1Q15390 333 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 SURF1Q15526 300 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 PPP4R1Q8TF05 950 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 ATP2A3Q93084 1043 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 GMLQ99445 158 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 LRRC4Q9HBW1 653 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 SUFUQ9UMX1 484 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 FAM237BA0A1B0GVD1 139 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 GOLGA8TH3BQL2 631 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 NEMP1O14524 444 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 ATP4AP20648 1035 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 TTLL4Q14679 1199 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 MSS51Q4VC12 460 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 PLEKHA7Q6IQ23 1121 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 OTOAQ7RTW8 1153 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 PID1Q7Z2X4 250 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 PIGWQ7Z7B1 504 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 APOBEC3FQ8IUX4 373 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 KIAA0319LQ8IZA0 1049 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 EFCAB3Q8N7B9 438 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 POU5F2Q8N7G0 328 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 RFWD2Q8NHY2 731 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 AFG1LQ8WV93 481 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 PGBD4Q96DM1 585 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 SIK2Q9H0K1 926 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 PCDH9Q9HC56 1237 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 UBP1Q9NZI7 540 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 KLHL8Q9P2G9 620 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 PACSIN3Q9UKS6 424 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 FNDC3AQ9Y2H6 1198 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 GRIN3BO60391 1043 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 DNAJC8O75937 253 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 STK10O94804 968 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 EDN1P05305 212 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 GHRP10912 638 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 RFC5P40937 340 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 GTF2A2P52657 109 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 ATXN1P54253 815 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 RCN1Q15293 331 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 PAN2Q504Q3 1202 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 DCAF6Q58WW2 860 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 CRELD2Q6UXH1 353 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 CATSPERGQ6ZRH7 1159 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 CRLF3Q8IUI8 442 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 SEC14L1Q92503 715 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 GRAMD1AQ96CP6 724 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 TMEM176AQ96HP8 235 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 TWNKQ96RR1 684 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 NT5C1AQ9BXI3 368 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 C2orf40Q9H1Z8 148 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 ZNF395Q9H8N7 513 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 BTBD7Q9P203 1132 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 NENFQ9UMX5 172 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 ERBB2P04626 1255 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 ACAT1P24752 427 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 RABGGTBP53611 331 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 XRCC4Q13426 336 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 C1orf146Q5VVC0 180 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 STRA6Q9BX79 667 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 TBC1D10AQ9BXI6 508 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 TMEM120AQ9BXJ8 343 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 CDT1Q9H211 546 aa12.66□□□□□ -0.38
CCDC88C-211ENST00000556726 LAMB1P07942 1786 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 MEI4A8MW99 385 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 CYB561D2O14569 222 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 CYP1A1P04798 512 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 THOC5Q13769 683 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 CYP1B1Q16678 543 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 FKBP1CQ5VVH2 108 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 XRRA1Q6P2D8 792 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 METTL7BQ6UX53 244 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 PAXIP1Q6ZW49 1069 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 PHF13Q86YI8 300 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 USP6NLQ92738 828 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 KCNK1O00180 336 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 SMIM24O75264 130 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 KRT38O76015 456 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 PAEPP09466 180 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 POLE2P56282 527 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 DPYSL3Q14195 570 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 GEN1Q17RS7 908 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 RWDD4Q6NW29 188 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 B3GNT9Q6UX72 402 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 POLNQ7Z5Q5 900 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 ACO2Q99798 780 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 MINDY3Q9H8M7 445 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 RSAD1Q9HA92 442 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 DPP3Q9NY33 737 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 RNF181Q9P0P0 153 aa12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 TIMM13Q9Y5L4 95 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 COL22A1Q8NFW1 1626 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-211ENST00000556726 ONECUT3O60422 494 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 TMEM63AO94886 807 aa12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 FARP2O94887 1054 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 ACO1P21399 889 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-211ENST00000556726 CCND1P24385 295 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms