RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 PRR25Q96S07 402 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 PUS7LQ9H0K6 701 aaKnown RBP4.27□□□□□ -1.73
SCFD1-218ENST00000556256 AMFRQ9UKV5 643 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.27□□□□□ -1.73
SCFD1-218ENST00000556256 HSD3B2P26439 372 aa4.26□□□□□ -1.73
SCFD1-218ENST00000556256 ADORA2AP29274 412 aa4.26□□□□□ -1.73
SCFD1-218ENST00000556256 PDE6CP51160 858 aa4.26□□□□□ -1.73
SCFD1-218ENST00000556256 HK3P52790 923 aa4.26□□□□□ -1.73
SCFD1-218ENST00000556256 EXOSC9Q06265 439 aaKnown RBP4.26□□□□□ -1.73
SCFD1-218ENST00000556256 C4orf46Q504U0 113 aa4.26□□□□□ -1.73
SCFD1-218ENST00000556256 KRTAP5-4Q6L8H1 288 aa4.26□□□□□ -1.73
SCFD1-218ENST00000556256 FAM177A1Q8N128 213 aaPredicted RBP4.26□□□□□ -1.73
SCFD1-218ENST00000556256 FAM126AQ9BYI3 521 aaPredicted RBP4.26□□□□□ -1.73
SCFD1-218ENST00000556256 ZBTB40Q9NUA8 1239 aa4.26□□□□□ -1.73
SCFD1-218ENST00000556256 TRMT13Q9NUP7 481 aaKnown RBP4.26□□□□□ -1.73
SCFD1-218ENST00000556256 SLC5A4Q9NY91 659 aa4.26□□□□□ -1.73
SCFD1-218ENST00000556256 PCDHA1Q9Y5I3 950 aa4.26□□□□□ -1.73
SCFD1-218ENST00000556256 VIL1P09327 827 aaKnown RBP4.25□□□□□ -1.73
SCFD1-218ENST00000556256 MYO1EQ12965 1108 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 ATG9BQ674R7 924 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 IZUMO1Q8IYV9 350 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 ABRAQ8N0Z2 381 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 MMP21Q8N119 569 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 SIRT6Q8N6T7 355 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 B4GALNT2Q8NHY0 566 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 IGFBPL1Q8WX77 278 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 MOGAT1Q96PD6 335 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 KRTAP4-4Q9BYR3 166 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 CXorf36Q9H7Y0 433 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 FEZ2Q9UHY8 353 aaPredicted RBP4.25□□□□□ -1.73
SCFD1-218ENST00000556256 SHOC2Q9UQ13 582 aa4.25□□□□□ -1.73
SCFD1-218ENST00000556256 LACTBL1A8MY62 500 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 SLC16A6O15403 523 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 GAS8-AS1O95177 125 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 UNC5CO95185 931 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 MYBL2P10244 700 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 HDCP19113 662 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 TNFRSF1BP20333 461 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 VIPR2P41587 438 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 COPB1P53618 953 aaKnown RBP4.24□□□□□ -1.73
SCFD1-218ENST00000556256 ADKP55263 362 aaKnown RBP4.24□□□□□ -1.73
SCFD1-218ENST00000556256 RPS13P62277 151 aaKnown RBP4.24□□□□□ -1.73
SCFD1-218ENST00000556256 MTX1Q13505 466 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 PCBP2Q15366 365 aaKnown RBP eCLIP4.24□□□□□ -1.73
SCFD1-218ENST00000556256 THEMIS2Q5TEJ8 643 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 ANO7Q6IWH7 933 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 ZNF280BQ86YH2 543 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 MPLKIPQ8TAP9 179 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 MRFAP1Q9Y605 127 aa4.24□□□□□ -1.73
SCFD1-218ENST00000556256 GRPP07492 148 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 TYRP14679 529 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 PHKG2P15735 406 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 LRPAP1P30533 357 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 ZXDBP98169 803 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 RANBP10Q6VN20 620 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 RFX6Q8HWS3 928 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 RSPRY1Q96DX4 576 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 LMBRD1Q9NUN5 540 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 LPAR3Q9UBY5 353 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 PLEKHM1Q9Y4G2 1056 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 SNX14Q9Y5W7 946 aa4.23□□□□□ -1.73
SCFD1-218ENST00000556256 IFITM10A6NMD0 228 aa4.22□□□□□ -1.73
SCFD1-218ENST00000556256 CES2O00748 559 aa4.22□□□□□ -1.73
SCFD1-218ENST00000556256 FGF2P09038 288 aa4.22□□□□□ -1.73
SCFD1-218ENST00000556256 APEHP13798 732 aaKnown RBP4.22□□□□□ -1.73
SCFD1-218ENST00000556256 LMAN2Q12907 356 aa4.22□□□□□ -1.73
SCFD1-218ENST00000556256 ABCB5Q2M3G0 1257 aa4.22□□□□□ -1.73
SCFD1-218ENST00000556256 ZIK1Q3SY52 487 aaPredicted RBP4.22□□□□□ -1.73
SCFD1-218ENST00000556256 EMC10Q5UCC4 262 aa4.22□□□□□ -1.73
SCFD1-218ENST00000556256 TMEM65Q6PI78 240 aa4.22□□□□□ -1.73
SCFD1-218ENST00000556256 UBE2Q1Q7Z7E8 422 aa4.22□□□□□ -1.73
SCFD1-218ENST00000556256 PNPOQ9NVS9 261 aa4.22□□□□□ -1.73
SCFD1-218ENST00000556256 XPR1Q9UBH6 696 aa4.22□□□□□ -1.73
SCFD1-218ENST00000556256 IGLV5-39A0A0G2JS06 123 aa4.21□□□□□ -1.74
SCFD1-218ENST00000556256 PLA2G2AP14555 144 aa4.21□□□□□ -1.74
SCFD1-218ENST00000556256 KRTAP5-9P26371 169 aa4.21□□□□□ -1.74
SCFD1-218ENST00000556256 GKP32189 559 aa4.21□□□□□ -1.74
SCFD1-218ENST00000556256 KRT85P78386 507 aa4.21□□□□□ -1.74
SCFD1-218ENST00000556256 ODF1Q14990 250 aa4.21□□□□□ -1.74
SCFD1-218ENST00000556256 LARS2Q15031 903 aaKnown RBP4.21□□□□□ -1.74
SCFD1-218ENST00000556256 EFCAB2Q5VUJ9 269 aa4.21□□□□□ -1.74
SCFD1-218ENST00000556256 GSG1LQ6UXU4 331 aa4.21□□□□□ -1.74
SCFD1-218ENST00000556256 ZNF479Q96JC4 524 aa4.21□□□□□ -1.74
SCFD1-218ENST00000556256 C17orf80Q9BSJ5 609 aa4.21□□□□□ -1.74
SCFD1-218ENST00000556256 MRPL44Q9H9J2 332 aaKnown RBP4.21□□□□□ -1.74
SCFD1-218ENST00000556256 SBNO2Q9Y2G9 1366 aa4.2□□□□□ -1.74
SCFD1-218ENST00000556256 PMPCBO75439 489 aa4.2□□□□□ -1.74
SCFD1-218ENST00000556256 FTLP02792 175 aaPredicted RBP4.2□□□□□ -1.74
SCFD1-218ENST00000556256 NGFRP08138 427 aa4.2□□□□□ -1.74
SCFD1-218ENST00000556256 ATF7P17544 494 aaPredicted RBP4.2□□□□□ -1.74
SCFD1-218ENST00000556256 PDCP20941 246 aa4.2□□□□□ -1.74
SCFD1-218ENST00000556256 DGKEP52429 567 aa4.2□□□□□ -1.74
SCFD1-218ENST00000556256 YPEL5P62699 121 aa4.2□□□□□ -1.74
SCFD1-218ENST00000556256 SLC9C1Q4G0N8 1177 aa4.2□□□□□ -1.74
SCFD1-218ENST00000556256 SYDE2Q5VT97 1194 aa4.2□□□□□ -1.74
SCFD1-218ENST00000556256 NR4A3Q92570 626 aa4.2□□□□□ -1.74
SCFD1-218ENST00000556256 FAM84BQ96KN1 310 aaPredicted RBP4.2□□□□□ -1.74
SCFD1-218ENST00000556256 FAM167AQ96KS9 214 aa4.2□□□□□ -1.74
SCFD1-218ENST00000556256 SEMA4BQ9NPR2 832 aaPredicted RBP4.2□□□□□ -1.74
SCFD1-218ENST00000556256 KCNA3P22001 575 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms