RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 TRIM50Q86XT4 487 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 IFNLR1Q8IU57 520 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-222ENST00000555774 DHX37Q8IY37 1157 aaKnown RBP14.09□□□□□ -0.15
SHMT2-222ENST00000555774 CXorf38Q8TB03 319 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 TCP10LQ8TDR4 215 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 HSPH1Q92598 858 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 RTP4Q96DX8 246 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 MRRFQ96E11 262 aaKnown RBP14.09□□□□□ -0.15
SHMT2-222ENST00000555774 SPATA33Q96N06 139 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 TWNKQ96RR1 684 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 CALN1Q9BXU9 219 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 PAK5Q9P286 719 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 TCRBV7S3A2A0A539 114 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 MT-ND3P03897 115 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 ITGB3P05106 788 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 STAG3L1P0CL83 205 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 ADRA1DP25100 572 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 SLC8A3P57103 927 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 SLC18A2Q05940 514 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 INCA1Q0VD86 236 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 PDK2Q15119 407 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 FAM102AQ5T9C2 384 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-222ENST00000555774 EFCAB12Q6NXP0 572 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 DARS2Q6PI48 645 aaKnown RBP14.09□□□□□ -0.15
SHMT2-222ENST00000555774 EEPD1Q7L9B9 569 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 NLRP9Q7RTR0 991 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 MAP7D3Q8IWC1 876 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 ZNF276Q8N554 614 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 SH3TC2Q8TF17 1288 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 SLC44A1Q8WWI5 657 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 APBB2Q92870 758 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 APOPT1Q96IL0 206 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 C10orf88Q9H8K7 445 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 LNPEPQ9UIQ6 1025 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 IKBKGQ9Y6K9 419 aa14.09□□□□□ -0.15
SHMT2-222ENST00000555774 C2CD4BA6NLJ0 364 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 E7ENQ6 273 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 DPYSL4O14531 572 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 CNMDO75829 334 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 TGDSO95455 350 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 DHRS4L1P0CG22 281 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 TGM2P21980 687 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 PSMC4P43686 418 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 ACCSLQ4AC99 568 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 ZNF484Q5JVG2 852 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 JADE1Q6IE81 842 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 ILDR2Q71H61 639 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 NT5DC4Q86YG4 428 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 AFG1LQ8WV93 481 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 UTP4Q969X6 686 aaKnown RBP14.08□□□□□ -0.16
SHMT2-222ENST00000555774 FGD4Q96M96 766 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 MANSC1Q9H8J5 431 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 ZFP69BQ9UJL9 534 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 BARX2Q9UMQ3 279 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-222ENST00000555774 L3MBTL1Q9Y468 752 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 CSADQ9Y600 493 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 TEX264Q9Y6I9 313 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 ANK1P16157 1881 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 A8MUI8 341 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 GPR25O00155 361 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 ITGBL1O95965 494 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-222ENST00000555774 TARSP26639 723 aaKnown RBP14.08□□□□□ -0.16
SHMT2-222ENST00000555774 ELK3P41970 407 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 NEK3P51956 506 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 CDH6P55285 790 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 ZNF200P98182 395 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-222ENST00000555774 PTK7Q13308 1070 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 CCDC62Q6P9F0 684 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 LCLAT1Q6UWP7 414 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 C4orf22Q6V702 233 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 GPATCH11Q8N954 259 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 NSMCE1Q8WV22 266 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 TEKT4Q8WW24 435 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 PEBP4Q96S96 227 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 TLE6Q9H808 572 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.08□□□□□ -0.16
SHMT2-222ENST00000555774 HMGXB4Q9UGU5 601 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 ITGA11Q9UKX5 1188 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 CHMP2BQ9UQN3 213 aa14.08□□□□□ -0.16
SHMT2-222ENST00000555774 A0A0G2JLL6 359 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-222ENST00000555774 ZNF487B1APH4 448 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 HGSO14964 777 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-222ENST00000555774 PRPSAP2O60256 369 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 LPXNO60711 386 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 C22orf31O95567 290 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 INHBAP08476 426 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 GSTA2P09210 222 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 T-ENOLP0DO92 83 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 FGFR1P11362 822 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 PTPN4P29074 926 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 MAGEA6P43360 314 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 TAF5Q15542 800 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 BOLA3Q53S33 107 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 WASHC2DQ5SRD0 308 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 GADL1Q6ZQY3 521 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 CYP4V2Q6ZWL3 525 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-222ENST00000555774 PRRT2Q7Z6L0 340 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-222ENST00000555774 TMEM192Q8IY95 271 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 MAB21L3Q8N8X9 362 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 CFAP61Q8NHU2 1237 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms