RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ARMCX3Q9UH62 379 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 ZFHX2Q9C0A1 2572 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-209ENST00000554872 CACNA1IQ9P0X4 2223 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 C2orf78A6NCI8 922 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 LAMTOR5O43504 91 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 GADD45BO75293 160 aaPredicted RBP17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 ZDHHC11BP0C7U3 371 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 HDCP19113 662 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 BMP6P22004 513 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 KPNA1P52294 538 aaPredicted RBP17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 TAF10Q12962 218 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 RUNX3Q13761 415 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 LRRC32Q14392 662 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 DGKKQ5KSL6 1271 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 TTI2Q6NXR4 508 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 CC2D1AQ6P1N0 951 aaPredicted RBP17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 TRIML1Q8N9V2 468 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 OSCP1Q8WVF1 389 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 ERCC4Q92889 916 aaPredicted RBP17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 SLC35C1Q96A29 364 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 FAM126AQ9BYI3 521 aaPredicted RBP17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 TRPC7Q9HCX4 862 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 GKN1Q9NS71 199 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 KRT82Q9NSB4 513 aa17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 SPATA6Q9NWH7 488 aaPredicted RBP17.02■□□□□ 0.32
CCDC88C-209ENST00000554872 PRR23AA6NEV1 266 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 AP1G2O75843 785 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 CLSTN1O94985 981 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 PAPSS2O95340 614 aaPredicted RBP17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 CD44P16070 742 aaKnown RBP17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 YWHAQP27348 245 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 SLC5A3P53794 718 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 AMPD2Q01433 879 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 TNK2Q07912 1038 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 CCINQ13939 588 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 TXNDC11Q6PKC3 985 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 FRMD5Q7Z6J6 570 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 FILIP1Q7Z7B0 1213 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 GPIHBP1Q8IV16 184 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 ARL14EPQ8N8R7 260 aaPredicted RBP17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 ZMIZ2Q8NF64 920 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 SLC2A14Q8TDB8 520 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 WHAMMQ8TF30 809 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 SEMA4DQ92854 862 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 NKD2Q969F2 451 aaPredicted RBP17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 ELMO3Q96BJ8 720 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 EEF2KMTQ96G04 330 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 TWNKQ96RR1 684 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 KCNK16Q96T55 309 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 SMOQ99835 787 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 MED10Q9BTT4 135 aa17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 NDRG2Q9UN36 371 aaKnown RBP17.01■□□□□ 0.31
CCDC88C-209ENST00000554872 BICDL2A1A5D9 508 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 TRIM49BA6NDI0 452 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 PPP1R3GB7ZBB8 358 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 GFRA3O60609 400 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 FAM200BP0CF97 657 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 TDGF1P13385 188 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 CCDC130P13994 396 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 MTAPQ13126 283 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 CBWD6Q4V339 395 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 CBWD3Q5JTY5 395 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 CBWD5Q5RIA9 395 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 DDX42Q86XP3 938 aaKnown RBP eCLIP17■□□□□ 0.31
CCDC88C-209ENST00000554872 C12orf29Q8N999 325 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 SH3RF2Q8TEC5 729 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 ATP2A3Q93084 1043 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 CHFRQ96EP1 664 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 CYP2S1Q96SQ9 504 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 FBXO44Q9H4M3 255 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 LMAN1LQ9HAT1 526 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 PCDHGA2Q9Y5H1 932 aa17■□□□□ 0.31
CCDC88C-209ENST00000554872 TRDMT1O14717 391 aaKnown RBP16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 SOX9P48436 509 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 CCR3P51677 355 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 MARSP56192 900 aaKnown RBP16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 PPP2R5DQ14738 602 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 EML3Q32P44 896 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 DCAF17Q5H9S7 520 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 TMEM196Q5HYL7 178 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 WDR44Q5JSH3 913 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 CLEC17AQ6ZS10 378 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 CLEC20AQ6ZU45 233 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 SPEM1Q8N4L4 309 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 CPA6Q8N4T0 437 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 ZBTB44Q8NCP5 570 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 FBXO32Q969P5 355 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 EXOC4Q96A65 974 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 CYFIP2Q96F07 1278 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 MMRN2Q9H8L6 949 aa16.99■□□□□ 0.31
CCDC88C-209ENST00000554872 OTOL1A6NHN0 477 aaPredicted RBP16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 HHLA1C9JL84 531 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 P4HA2O15460 535 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 GNA14O95837 355 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 ZXDBP98169 803 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 TCERG1LQ5VWI1 586 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 SCAMP5Q8TAC9 235 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 RNF38Q9H0F5 515 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 EBF3Q9H4W6 596 aa16.98■□□□□ 0.31
CCDC88C-209ENST00000554872 ECT2Q9H8V3 914 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms