RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 DPEP3Q9H4B8 488 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 C2orf42Q9NWW7 574 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 CEP250Q9BV73 2442 aa13.56□□□□□ -0.24
LINC00643-202ENST00000553426 KMT2BQ9UMN6 2715 aaPredicted RBP13.55□□□□□ -0.24
LINC00643-202ENST00000553426 OBSL1O75147 1896 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 LRRIQ3A6PVS8 624 aaPredicted RBP13.55□□□□□ -0.24
LINC00643-202ENST00000553426 LEFTY2O00292 366 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 IKBKBO14920 756 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 RPP40O75818 363 aaKnown RBP13.55□□□□□ -0.24
LINC00643-202ENST00000553426 NR3C1P04150 777 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 CCDC192P0DO97 292 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 CLDN10P78369 228 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 SRSF5Q13243 272 aaKnown RBP13.55□□□□□ -0.24
LINC00643-202ENST00000553426 CEP135Q66GS9 1140 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 RPLP0P6Q8NHW5 317 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 TMC2Q8TDI7 906 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 GAB3Q8WWW8 586 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 OVCA2Q8WZ82 227 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 TAF4BQ92750 862 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 FBXO32Q969P5 355 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 CHFRQ96EP1 664 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 SMARCD1Q96GM5 515 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 RTKNQ9BST9 563 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 B3GNT5Q9BYG0 378 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 IMPG2Q9BZV3 1241 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 SCAND2PQ9GZW5 306 aaPredicted RBP13.55□□□□□ -0.24
LINC00643-202ENST00000553426 GZF1Q9H116 711 aaPredicted RBP13.55□□□□□ -0.24
LINC00643-202ENST00000553426 LINC00597Q9H2U6 94 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 SMYD3Q9H7B4 428 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 SEMA4GQ9NTN9 838 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 DMAC2Q9NW81 257 aa13.55□□□□□ -0.24
LINC00643-202ENST00000553426 KIF26AQ9ULI4 1882 aaPredicted RBP13.55□□□□□ -0.24
LINC00643-202ENST00000553426 CLDN5O00501 218 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 AKAP3O75969 853 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 C4BPAP04003 597 aaKnown RBP13.54□□□□□ -0.24
LINC00643-202ENST00000553426 MBL2P11226 248 aaPredicted RBP13.54□□□□□ -0.24
LINC00643-202ENST00000553426 TGM1P22735 817 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 PXNP49023 591 aaPredicted RBP13.54□□□□□ -0.24
LINC00643-202ENST00000553426 CDH8P55286 799 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 CSRP2Q16527 193 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 PKN3Q6P5Z2 889 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 SCARA5Q6ZMJ2 495 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 SYT13Q7L8C5 426 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 CACNA2D4Q7Z3S7 1137 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 FAM160A2Q8N612 972 aaPredicted RBP13.54□□□□□ -0.24
LINC00643-202ENST00000553426 CCDC150Q8NCX0 1101 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 NETO1Q8TDF5 533 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 LOXL4Q96JB6 756 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 KCTD10Q9H3F6 313 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 FBRSL1Q9HCM7 1045 aaKnown RBP13.54□□□□□ -0.24
LINC00643-202ENST00000553426 PARD6AQ9NPB6 346 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 DMAP1Q9NPF5 467 aaPredicted RBP13.54□□□□□ -0.24
LINC00643-202ENST00000553426 COMMD8Q9NX08 183 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 SMPD4Q9NXE4 827 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 TBC1D14Q9P2M4 693 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 NME7Q9Y5B8 376 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 CPQQ9Y646 472 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 NCOR2Q9Y618 2525 aa13.54□□□□□ -0.24
LINC00643-202ENST00000553426 AXIN1O15169 862 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 MAPK13O15264 365 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 APBB3O95704 486 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 ADH1CP00326 375 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 KRT13P13646 458 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 RPL13P26373 211 aaKnown RBP13.53□□□□□ -0.24
LINC00643-202ENST00000553426 PIK3CAP42336 1068 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 RAP1GAPP47736 663 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 ATXN1P54253 815 aaKnown RBP13.53□□□□□ -0.24
LINC00643-202ENST00000553426 ZACNQ401N2 412 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 HECTD3Q5T447 861 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 FILIP1Q7Z7B0 1213 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 ACOT1Q86TX2 421 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 FAM35AQ86V20 835 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 PLEKHO2Q8TD55 490 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 NACA2Q9H009 215 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 RNF38Q9H0F5 515 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 CFAP97Q9P2B7 532 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 HPSEQ9Y251 543 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 CACNA1BQ00975 2339 aa13.53□□□□□ -0.24
LINC00643-202ENST00000553426 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.52□□□□□ -0.25
LINC00643-202ENST00000553426 AP1G2O75843 785 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 OLFM2O95897 454 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 OAS1P00973 400 aaKnown RBP13.52□□□□□ -0.25
LINC00643-202ENST00000553426 NR2F2P24468 414 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 VAMP7P51809 220 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 CACNA2D1P54289 1103 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 DLG4P78352 724 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 DMC1Q14565 340 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 PRR23CQ6ZRP0 262 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 INTS8Q75QN2 995 aaKnown RBP13.52□□□□□ -0.25
LINC00643-202ENST00000553426 SV2AQ7L0J3 742 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 UNC93AQ86WB7 457 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 ADGRG2Q8IZP9 1017 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 HHIPQ96QV1 700 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 KCNK16Q96T55 309 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 FBXO44Q9H4M3 255 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 KRT82Q9NSB4 513 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 CHORDC1Q9UHD1 332 aaPredicted RBP13.52□□□□□ -0.25
LINC00643-202ENST00000553426 TRAF3IP3Q9Y228 551 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 SH3BP1Q9Y3L3 701 aa13.52□□□□□ -0.25
LINC00643-202ENST00000553426 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms