RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 INO80BQ9C086 356 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-213ENST00000552720 ELOVL4Q9GZR5 314 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 DENND2DQ9H6A0 471 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-213ENST00000552720 NRBP2Q9NSY0 501 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 KCNG1Q9UIX4 513 aa7.84□□□□□ -1.15
LIMA1-213ENST00000552720 SSC5DA1L4H1 1573 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 CFAP69A5D8W1 941 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 E5RJQ4 531 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 C2CD2LO14523 706 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 LPXNO60711 386 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 MICAL2O94851 1124 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 KRT7P08729 469 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 GNAZP19086 355 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 BGNP21810 368 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 PHBP35232 272 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 YWHAEP62258 255 aaKnown RBP7.84□□□□□ -1.16
LIMA1-213ENST00000552720 PTK7Q13308 1070 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 TAZQ16635 292 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 CYP4V2Q6ZWL3 525 aaPredicted RBP7.84□□□□□ -1.16
LIMA1-213ENST00000552720 PCGF5Q86SE9 256 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 TTC7BQ86TV6 843 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 PDIK1LQ8N165 341 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 CCDC33Q8N5R6 958 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 MAB21L3Q8N8X9 362 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 C1orf127Q8N9H9 656 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 COPS5Q92905 334 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 KLRG1Q96E93 195 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 NUDCD1Q96RS6 583 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 MANSC1Q9H8J5 431 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 KCNK13Q9HB14 408 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 ARL8BQ9NVJ2 186 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 GPATCH2LQ9NWQ4 482 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 HEY2Q9UBP5 337 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 USP18Q9UMW8 372 aa7.84□□□□□ -1.16
LIMA1-213ENST00000552720 M0QYV0 167 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 UGT1A9O60656 530 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 TRUB2O95900 331 aaKnown RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 ITGB3P05106 788 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 PGK2P07205 417 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 TPBGLP0DKB5 382 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 SERPINB3P29508 390 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CLCN3P51790 818 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 AP3M2P53677 418 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CDH6P55285 790 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 YWHAGP61981 247 aaKnown RBP eCLIP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CRYMQ14894 314 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 RASA2Q15283 850 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 TAF11Q15544 211 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 HADHQ16836 314 aaKnown RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 KLHL38Q2WGJ6 581 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 SLC45A4Q5BKX6 768 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 ZNF667Q5HYK9 610 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 FAM102AQ5T9C2 384 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 ATF7IP2Q5U623 682 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CDCA2Q69YH5 1023 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 TRIM68Q6AZZ1 485 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 DARS2Q6PI48 645 aaKnown RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 DSTYKQ6XUX3 929 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 NCAPG2Q86XI2 1143 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 DNERQ8NFT8 737 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 TRPM4Q8TD43 1214 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 INPP5DQ92835 1189 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CFAP36Q96G28 342 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 MECRQ9BV79 373 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CADM1Q9BY67 442 aaKnown RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 VPS33BQ9H267 617 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 ZNF395Q9H8N7 513 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 RNPEPL1Q9HAU8 725 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 UGT1A7Q9HAW7 530 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 UGT1A10Q9HAW8 530 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 UGT1A8Q9HAW9 530 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 PTPRHQ9HD43 1115 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 HOXC10Q9NYD6 342 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 DONSONQ9NYP3 566 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 PIM2Q9P1W9 311 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 PPP1R1BQ9UD71 204 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 STRIP2Q9ULQ0 834 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CXorf49A8MYA2 514 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 C19orf81C9J6K1 198 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 APOC4-APOC2K7ER74 178 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 GPR25O00155 361 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 MCF2LO15068 1137 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 ATP5HO75947 161 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 TNNC2P02585 160 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 APOC2P02655 101 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 MT-ND3P03897 115 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CYP3A5P20815 502 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CALB2P22676 271 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 PROZP22891 400 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 POLR2BP30876 1174 aaKnown RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 ETV4P43268 484 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 EFNA5P52803 228 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 PTPN11Q06124 597 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 GRM1Q13255 1194 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 KHDC1Q4VXA5 237 aaKnown RBP7.83□□□□□ -1.16
LIMA1-213ENST00000552720 FYB2Q5VWT5 728 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 IER5Q5VY09 327 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 CES4AQ5XG92 561 aa7.83□□□□□ -1.16
LIMA1-213ENST00000552720 MAP1SQ66K74 1059 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms