RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 IGKV6-21A0A0C4DH24 114 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 SRRM3A6NNA2 597 aaPredicted RBP7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 MAN2B1O00754 1011 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 GIPC1O14908 333 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 PMM2O15305 246 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 CLDN3O15551 220 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 ECI2O75521 394 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 TOP3BO95985 862 aaKnown RBP7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 PRKCBP05771 671 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 HNRNPA1P09651 372 aaKnown RBP eCLIP7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 SRGAP2CP0DJJ0 459 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 ANXA13P27216 316 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 FMO5P49326 533 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 CASP4P49662 377 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 LAMTOR4Q0VGL1 99 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 FZD5Q13467 585 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 CAPSQ13938 189 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 PCBP1Q15365 356 aaKnown RBP eCLIP7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 ASIC2Q16515 512 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 SNRNP35Q16560 246 aaKnown RBP7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 SLC5A9Q2M3M2 681 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 UBXN11Q5T124 520 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 SFMBT2Q5VUG0 894 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 RNF43Q68DV7 783 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 LILRA6Q6PI73 481 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 Q6ZS52 159 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 RRAGAQ7L523 313 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 LONP2Q86WA8 852 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 CCAR2Q8N163 923 aaKnown RBP7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 KDF1Q8NAX2 398 aaPredicted RBP7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 RNF149Q8NC42 400 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 ASAP3Q8TDY4 903 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 BSNDQ8WZ55 320 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 FAM3CQ92520 227 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 DNASE1L2Q92874 299 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 CCDC42Q96M95 316 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 DNAJC7Q99615 494 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 TCHPQ9BT92 498 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 COLEC11Q9BWP8 271 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 EIF2AQ9BY44 585 aaKnown RBP7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 NFKBIZQ9BYH8 718 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 TSGA10Q9BZW7 698 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 PCIF1Q9H4Z3 704 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 RRAGDQ9NQL2 400 aaPredicted RBP7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 CHST7Q9NS84 486 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 GCNT4Q9P109 453 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 FBXL5Q9UKA1 691 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 ADAM28Q9UKQ2 775 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 AGO2Q9UKV8 859 aaKnown RBP7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 IPPQ9Y573 584 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 DMXL2Q8TDJ6 3036 aa7.59□□□□□ -1.19
DEPDC4-208ENST00000549341 CASTOR2A6NHX0 329 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 SHISA7A6NL88 538 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 INO80B-WBP1J3KQ70 363 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 ACKR2O00590 384 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 ADAM12O43184 909 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 TADA2AO75478 443 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 TOM1L1O75674 476 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 ERLIN2O94905 339 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 PAPLNO95428 1278 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 SERPING1P05155 500 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 TNNT1P13805 278 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 FERP16591 822 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 HOXC13P31276 330 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 HNRNPH3P31942 346 aaKnown RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 STAT1P42224 750 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 MXI1P50539 228 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 LIMK1P53667 647 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 POLR2FP61218 127 aaKnown RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 DSC1Q08554 894 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 PRPF4BQ13523 1007 aaKnown RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 PSMD5Q16401 504 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 MEA1Q16626 185 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 TDRD12Q587J7 1177 aaKnown RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 RNFT1Q5M7Z0 435 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 CDCA2Q69YH5 1023 aaPredicted RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 TANGO2Q6ICL3 276 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 PDXDC1Q6P996 788 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 SRGAP1Q7Z6B7 1085 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 MRPL10Q7Z7H8 261 aaKnown RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 KIAA1328Q86T90 577 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 SMG8Q8ND04 991 aaKnown RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 ARMC2Q8NEN0 867 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 SLC35C1Q96A29 364 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 PRIMPOLQ96LW4 560 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 CEP89Q96ST8 783 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 ADPGKQ9BRR6 497 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 CBWD1Q9BRT8 395 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 IER2Q9BTL4 223 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 MSTO1Q9BUK6 570 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 EDEM2Q9BV94 578 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 KIFC3Q9BVG8 833 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 TRIM6Q9C030 488 aaPredicted RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 TTYH3Q9C0H2 523 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 NXF3Q9H4D5 531 aaKnown RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 MINDY3Q9H8M7 445 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 TMEM8AQ9HCN3 771 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 FNIP2Q9P278 1114 aa7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 DNMT3BQ9UBC3 853 aaKnown RBP7.58□□□□□ -1.2
DEPDC4-208ENST00000549341 PPP2R2CQ9Y2T4 447 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms