RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 C8orf33Q9H7E9 229 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-204ENST00000549064 INVSQ9Y283 1065 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 HIF3AQ9Y2N7 669 aa7.16□□□□□ -1.26
LIMA1-204ENST00000549064 TNRC6BQ9UPQ9 1833 aaKnown RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 LOC100289279A0A1B0GTE1 492 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 ARHGEF37A1IGU5 675 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 hCG_1984214I3L0E3 225 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 INO80B-WBP1J3KQ70 363 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 PRRG1O14668 218 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 PTGESO14684 152 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 ZNF197O14709 1029 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 AKAP3O75969 853 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 SEC24AO95486 1093 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 DLGAP3O95886 979 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 S100BP04271 92 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 PRKCBP05771 671 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 TKTP29401 623 aaKnown RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 AXLP30530 894 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 L1CAMP32004 1257 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 BRCC3P46736 316 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 MLLT6P55198 1093 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 ARPP19P56211 112 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 PTENP60484 403 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 IRX4P78413 519 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 SIM1P81133 766 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 SPIRE1Q08AE8 756 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 HDAC1Q13547 482 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 NAB2Q15742 525 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 ZC3H12AQ5D1E8 599 aaKnown RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 FOXB2Q5VYV0 432 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 B3GNT9Q6UX72 402 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 CD300LGQ6UXG3 332 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 CHD1LQ86WJ1 897 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 RALGPS2Q86X27 583 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 WFDC8Q8IUA0 241 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 TEX2Q8IWB9 1127 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 YAF2Q8IY57 180 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 HACE1Q8IYU2 909 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 CHCHD4Q8N4Q1 142 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 ZNF713Q8N859 430 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 CCDC51Q96ER9 411 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 MSANTD3Q96H12 275 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 LRIG1Q96JA1 1093 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 CEP170P1Q96L14 293 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 LRRC3BQ96PB8 259 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 JPH2Q9BR39 696 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 MTA3Q9BTC8 594 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 GLT8D2Q9H1C3 349 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 DHX33Q9H6R0 707 aaKnown RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 CYP4F11Q9HBI6 524 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 CEP72Q9P209 647 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 WRAP73Q9P2S5 460 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 SLC8A2Q9UPR5 921 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 PLAAQ9Y263 795 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 INSL5Q9Y5Q6 135 aa7.15□□□□□ -1.26
LIMA1-204ENST00000549064 RBM8AQ9Y5S9 174 aaKnown RBP7.15□□□□□ -1.26
LIMA1-204ENST00000549064 PI4KAP42356 2102 aa7.15□□□□□ -1.27
LIMA1-204ENST00000549064 ACACAQ13085 2346 aa7.15□□□□□ -1.27
LIMA1-204ENST00000549064 CCDC163A0A0D9SF12 145 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 ESYT2A0FGR8 921 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 CHADO15335 359 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 MEFVO15553 781 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-204ENST00000549064 EIF4EBP3O60516 100 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-204ENST00000549064 APC2O95996 2303 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 PDGFRBP09619 1106 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 MYCLP1P12525 358 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-204ENST00000549064 GSPT1P15170 499 aaKnown RBP7.14□□□□□ -1.27
LIMA1-204ENST00000549064 PTPRDP23468 1912 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 GBP1P32455 592 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 ELF1P32519 619 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 PSMC5P62195 406 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 FAM193AP78312 1265 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 MBTD1Q05BQ5 628 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 TNK2Q07912 1038 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 ELAVL2Q12926 359 aaKnown RBP7.14□□□□□ -1.27
LIMA1-204ENST00000549064 EMC2Q15006 297 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 LAPTM4AQ15012 233 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 SUZ12Q15022 739 aaKnown RBP7.14□□□□□ -1.27
LIMA1-204ENST00000549064 ELF2Q15723 593 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 TM4SF20Q53R12 229 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 STXBP5Q5T5C0 1151 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 CYP4A22Q5TCH4 519 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 TDRD10Q5VZ19 366 aaKnown RBP7.14□□□□□ -1.27
LIMA1-204ENST00000549064 FSTL4Q6MZW2 842 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 PDXDC1Q6P996 788 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 C1orf228Q6PIY5 440 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 APOA5Q6Q788 366 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 SLCO4C1Q6ZQN7 724 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 RTL10Q7L3V2 364 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 SGMS1Q86VZ5 419 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 JAMLQ86YT9 394 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 GALNT11Q8NCW6 608 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 RDM1Q8NG50 284 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 ZNF461Q8TAF7 563 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 SHKBP1Q8TBC3 707 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 TCEANC2Q96MN5 208 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 ASXL3Q9C0F0 2248 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 WNT10AQ9GZT5 417 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 ZMYND12Q9H0C1 365 aa7.14□□□□□ -1.27
LIMA1-204ENST00000549064 SLITRK6Q9H5Y7 841 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms