RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 MIS12Q9H081 205 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 SEMA4AQ9H3S1 761 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 METTL5Q9NRN9 209 aaKnown RBP15.04■□□□□ -0
VPS33A-209ENST00000544349 OGDHLQ9ULD0 1010 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 E5RJQ4 531 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 E7EVH7 732 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 F8VP50 259 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 CCDC130P13994 396 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 SELPP16109 830 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 SPDYCQ5MJ68 293 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 SLC24A5Q71RS6 500 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 CCDC105Q8IYK2 499 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 ANKRD52Q8NB46 1076 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 LINC01599Q8WXQ3 324 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 SLC4A5Q9BY07 1137 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 TSPYL1Q9H0U9 437 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 RNF208Q9H0X6 261 aa15.03■□□□□ -0
VPS33A-209ENST00000544349 PABPC3Q9H361 631 aaKnown RBP15.03■□□□□ -0
VPS33A-209ENST00000544349 SMIM23A6NLE4 172 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 TP73O15350 636 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 INPPL1O15357 1258 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 EOMESO95936 686 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 CCL5P13501 91 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 SSR1P43307 286 aaKnown RBP15.02■□□□□ -0
VPS33A-209ENST00000544349 RGS7P49802 495 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 PDE4CQ08493 712 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 BFSP2Q13515 415 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 ARFGAP2Q8N6H7 521 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 STK32AQ8WU08 396 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 CHST7Q9NS84 486 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 INPP5FQ9Y2H2 1132 aa15.02■□□□□ -0
VPS33A-209ENST00000544349 PIK3R2O00459 728 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 PSMA2P25787 234 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 ADORA2BP29275 332 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 LIG3P49916 1009 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 FAM189BP81408 668 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 BST2Q10589 180 aaKnown RBP15.02□□□□□ -0.01
VPS33A-209ENST00000544349 TUSC3Q13454 348 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 SNX1Q13596 522 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 SLC29A2Q14542 456 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 FAM102AQ5T9C2 384 aaPredicted RBP15.02□□□□□ -0.01
VPS33A-209ENST00000544349 DENND2CQ68D51 928 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 OR6B2Q6IFH4 312 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 DSTYKQ6XUX3 929 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 FAM183BPQ6ZVS7 135 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 TMEM110Q86TL2 294 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 KATNAL2Q8IYT4 538 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 TMEM86AQ8N2M4 240 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 EMC1Q8N766 993 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 B3GALNT2Q8NCR0 500 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 MDM1Q8TC05 714 aa15.02□□□□□ -0.01
VPS33A-209ENST00000544349 FSCN2O14926 492 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 ATP2C2O75185 946 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 TCF4P15884 667 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 FNTAP49354 379 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 BCAT1P54687 386 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 QPCTQ16769 361 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 TIGD5Q53EQ6 642 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 ODF2Q5BJF6 829 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 LRRC38Q5VT99 294 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 TADA2BQ86TJ2 420 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 PACS2Q86VP3 889 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 DNAJC5GQ8N7S2 189 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 SLC2A14Q8TDB8 520 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 EPS8L3Q8TE67 593 aaKnown RBP15.01□□□□□ -0.01
VPS33A-209ENST00000544349 ART4Q93070 314 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 FTHL17Q9BXU8 183 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 MTUS1Q9ULD2 1270 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 R3HDM2Q9Y2K5 976 aaKnown RBP15.01□□□□□ -0.01
VPS33A-209ENST00000544349 GABBR2O75899 941 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 ECEL1O95672 775 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 FAM107AO95990 144 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 PTPN1P18031 435 aaKnown RBP15.01□□□□□ -0.01
VPS33A-209ENST00000544349 ACAT1P24752 427 aaKnown RBP15.01□□□□□ -0.01
VPS33A-209ENST00000544349 LHX1P48742 406 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 EIF3BP55884 814 aaKnown RBP15.01□□□□□ -0.01
VPS33A-209ENST00000544349 SNX16P57768 344 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 KRT17Q04695 432 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 GPNMBQ14956 572 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 EXD1Q8NHP7 514 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 UROC1Q96N76 676 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 HNRNPABQ99729 332 aaKnown RBP15.01□□□□□ -0.01
VPS33A-209ENST00000544349 LRRC19Q9H756 370 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 AAASQ9NRG9 546 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 WBP1LQ9NX94 342 aa15.01□□□□□ -0.01
VPS33A-209ENST00000544349 DDX43Q9NXZ2 648 aaKnown RBP15.01□□□□□ -0.01
VPS33A-209ENST00000544349 TRAPPC3O43617 180 aa15□□□□□ -0.01
VPS33A-209ENST00000544349 NBNO60934 754 aa15□□□□□ -0.01
VPS33A-209ENST00000544349 B3GAT3O94766 335 aa15□□□□□ -0.01
VPS33A-209ENST00000544349 TKTP29401 623 aaKnown RBP15□□□□□ -0.01
VPS33A-209ENST00000544349 GJC1P36383 396 aa15□□□□□ -0.01
VPS33A-209ENST00000544349 RPL34P49207 117 aaKnown RBP15□□□□□ -0.01
VPS33A-209ENST00000544349 ATP13A4Q4VNC1 1196 aa15□□□□□ -0.01
VPS33A-209ENST00000544349 KIAA0319Q5VV43 1072 aa15□□□□□ -0.01
VPS33A-209ENST00000544349 CD300LGQ6UXG3 332 aa15□□□□□ -0.01
VPS33A-209ENST00000544349 ANKS1BQ7Z6G8 1248 aa15□□□□□ -0.01
VPS33A-209ENST00000544349 ARFGAP1Q8N6T3 406 aa15□□□□□ -0.01
VPS33A-209ENST00000544349 RAPGEF5Q92565 580 aa15□□□□□ -0.01
VPS33A-209ENST00000544349 PIWIL1Q96J94 861 aaKnown RBP15□□□□□ -0.01
VPS33A-209ENST00000544349 FAM118BQ9BPY3 351 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms