RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	GCNA	Q96QF7	691 aa		10.71	□□□□□ -0.69
CPSF7-221	ENST00000543545	CHP1	Q99653	195 aa		10.71	□□□□□ -0.69
CPSF7-221	ENST00000543545	MIS12	Q9H081	205 aa		10.71	□□□□□ -0.69
CPSF7-221	ENST00000543545	FBXO44	Q9H4M3	255 aa		10.71	□□□□□ -0.69
CPSF7-221	ENST00000543545	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	10.71	□□□□□ -0.69
CPSF7-221	ENST00000543545	ASAH2	Q9NR71	780 aa		10.71	□□□□□ -0.69
CPSF7-221	ENST00000543545	TMEM30A	Q9NV96	361 aa		10.71	□□□□□ -0.69
CPSF7-221	ENST00000543545	ARHGAP20	Q9P2F6	1191 aa		10.71	□□□□□ -0.69
CPSF7-221	ENST00000543545	CHD7	Q9P2D1	2997 aa		10.71	□□□□□ -0.7
CPSF7-221	ENST00000543545	GBF1	Q92538	1859 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	SSU72P8	A0A1W2PR75	194 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545		H3BQ06	376 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	DDX3X	O00571	662 aa	Known RBP eCLIP	10.7	□□□□□ -0.7	2e-6	■■■□□ 16.2
CPSF7-221	ENST00000543545	CYP1A1	P04798	512 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	USP46	P62068	366 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	CDK17	Q00537	523 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	DLX2	Q07687	328 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	ADIG	Q0VDE8	80 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	TAF10	Q12962	218 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	CTC1	Q2NKJ3	1217 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	CCDC122	Q5T0U0	273 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	OR6B2	Q6IFH4	312 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	ACAD10	Q6JQN1	1059 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	SYCE2	Q6PIF2	218 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	MMS22L	Q6ZRQ5	1243 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	PDZD4	Q76G19	769 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	GPRIN1	Q7Z2K8	1008 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	GRASP	Q7Z6J2	395 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	TMTC1	Q8IUR5	882 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	HS6ST3	Q8IZP7	471 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	CMAS	Q8NFW8	434 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	MAFA	Q8NHW3	353 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	KCTD13	Q8WZ19	329 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	HLA-C	Q95604	372 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	FBXO32	Q969P5	355 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	ZNF707	Q96C28	371 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	SLITRK1	Q96PX8	696 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	BAG1	Q99933	345 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	ULBP1	Q9BZM6	244 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	ADAM7	Q9H2U9	754 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	UBE2Z	Q9H832	354 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	PNPLA8	Q9NP80	782 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	COMMD8	Q9NX08	183 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	CLEC1B	Q9P126	229 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	CHORDC1	Q9UHD1	332 aa	Predicted RBP	10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	CYTH4	Q9UIA0	394 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	CD207	Q9UJ71	328 aa		10.7	□□□□□ -0.7
CPSF7-221	ENST00000543545	PRRC2B	Q5JSZ5	2229 aa	Known RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	HHLA1	C9JL84	531 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545		E5RJQ4	531 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	TNFRSF10B	O14763	440 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	TBX10	O75333	385 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	ZBED1	O96006	694 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	FTL	P02792	175 aa	Predicted RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	RHO	P08100	348 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	USP17L7	P0C7H9	530 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	UNG	P13051	313 aa	Predicted RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	GABRR2	P28476	465 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	CDH5	P33151	784 aa	Predicted RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	CYLC1	P35663	651 aa	Predicted RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	LTBR	P36941	435 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	KIF11	P52732	1056 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	NOMO3	P69849	1222 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	NTHL1	P78549	312 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	ITIH3	Q06033	890 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	GFPT1	Q06210	699 aa	Predicted RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	MAPK8IP2	Q13387	824 aa	Predicted RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	PABPC1L	Q4VXU2	614 aa	Known RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	PPP1R2P3	Q6NXS1	205 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	GPR149	Q86SP6	731 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	PHLDB2	Q86SQ0	1253 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	SCUBE3	Q8IX30	993 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	NDRG1	Q92597	394 aa	Known RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	GOLGA1	Q92805	767 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	C18orf8	Q96DM3	657 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	RIPOR3	Q96MK2	946 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	CPXM1	Q96SM3	734 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	C11orf70	Q9BRQ4	267 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	SYT11	Q9BT88	431 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	SLC4A5	Q9BY07	1137 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	ATXN3L	Q9H3M9	355 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	ZNF334	Q9HCZ1	680 aa	Predicted RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	HCFC1R1	Q9NWW0	138 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	TAS2R14	Q9NYV8	317 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	TRPM5	Q9NZQ8	1165 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	ADAM22	Q9P0K1	906 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	DNMT3B	Q9UBC3	853 aa	Known RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	UXT	Q9UBK9	157 aa	Predicted RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	MRPS23	Q9Y3D9	190 aa	Known RBP	10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545	KIAA1671	Q9BY89	1806 aa		10.69	□□□□□ -0.7
CPSF7-221	ENST00000543545		A0A087X0T9	212 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	GOLGA8S	H3BPF8	625 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	ZNF197	O14709	1029 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	FBXO21	O94952	628 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	IPO7	O95373	1038 aa	Known RBP	10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	FGF19	O95750	216 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	ERBB2	P04626	1255 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	CALB1	P05937	261 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	POU2F2	P09086	479 aa		10.68	□□□□□ -0.7
CPSF7-221	ENST00000543545	FAM228B	P0C875	321 aa		10.68	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms