RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	PORCN	Q9H237	461 aa		13.5	□□□□□ -0.25
DDX11-223	ENST00000542838	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.5	□□□□□ -0.25
DDX11-223	ENST00000542838	CNTN3	Q9P232	1028 aa		13.5	□□□□□ -0.25
DDX11-223	ENST00000542838	ZNF212	Q9UDV6	495 aa		13.5	□□□□□ -0.25
DDX11-223	ENST00000542838	ADGRA2	Q96PE1	1338 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838		H3BRJ5	948 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	PLSCR1	O15162	318 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	ENO1	P06733	434 aa	Known RBP	13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	AMPD1	P23109	780 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	POLR2B	P30876	1174 aa	Known RBP	13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	CDH5	P33151	784 aa	Predicted RBP	13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	OR52E8	Q6IFG1	317 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	DENND1B	Q6P3S1	775 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	ZBTB33	Q86T24	672 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	EMC1	Q8N766	993 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	HSPH1	Q92598	858 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	ATG4C	Q96DT6	458 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	SRPK1	Q96SB4	655 aa	Known RBP	13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	PCDHGC3	Q9UN70	934 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	C2CD2	Q9Y426	696 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	WASF2	Q9Y6W5	498 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838		A8MXQ7	604 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838		I3L4J1	428 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	APOC4-APOC2	K7ER74	178 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	FAM155B	O75949	473 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	APOC2	P02655	101 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	KCNA3	P22001	575 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	PSMC1	P62191	440 aa	Known RBP	13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	AP1AR	Q63HQ0	302 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	CDHR3	Q6ZTQ4	885 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	BRSK2	Q8IWQ3	736 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	CTAGE3P	Q8IX95	158 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	CFAP36	Q96G28	342 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	MECR	Q9BV79	373 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	CALN1	Q9BXU9	219 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	ARHGEF4	Q9NR80	690 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	POLI	Q9UNA4	740 aa		13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	13.49	□□□□□ -0.25
DDX11-223	ENST00000542838	TRIM49D1	C9J1S8	452 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	IL1B	P01584	269 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	SUPT20HL2	P0C7V6	817 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	CD19	P15391	556 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	TRPC3	Q13507	836 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	TAF5	Q15542	800 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	SUPT20HL1	Q3ZLR7	823 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	MDH1B	Q5I0G3	518 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	FAM182A	Q5T1J6	154 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	DARS2	Q6PI48	645 aa	Known RBP	13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	WDR49	Q8IV35	697 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	SPATA18	Q8TC71	538 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	AKT1S1	Q96B36	256 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	PPARGC1A	Q9UBK2	798 aa	Known RBP	13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	PGAP2	Q9UHJ9	254 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	TEX264	Q9Y6I9	313 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	PSME4	Q14997	1843 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	VWA5A	O00534	786 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	AVIL	O75366	819 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	ARL2	P36404	184 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	RAP1GDS1	P52306	607 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	CACNA2D1	P54289	1103 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	MAP3K10	Q02779	954 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	MTMR2	Q13614	643 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	TAZ	Q16635	292 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	TTC39B	Q5VTQ0	682 aa	Predicted RBP	13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	NPNT	Q6UXI9	565 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	PRPF39	Q86UA1	669 aa	Known RBP	13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	TMPRSS6	Q8IU80	811 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	PPM1N	Q8N819	430 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	NSUN6	Q8TEA1	469 aa	Known RBP	13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	TCHP	Q9BT92	498 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	KRT82	Q9NSB4	513 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	MAGEA13P	A6NCF6	341 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	KLF11	O14901	512 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	AP3M2	P53677	418 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	YWHAE	P62258	255 aa	Known RBP	13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	TMPRSS15	P98073	1019 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	ROR1	Q01973	937 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	FAM91A1	Q658Y4	838 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	SLC26A11	Q86WA9	606 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	TREML1	Q86YW5	311 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	SMC1B	Q8NDV3	1235 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	SLC7A3	Q8WY07	619 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	FAF2	Q96CS3	445 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	ZNF184	Q99676	751 aa	Predicted RBP	13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	DHX33	Q9H6R0	707 aa	Known RBP	13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	ZNF302	Q9NR11	478 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	KCNK4	Q9NYG8	393 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	CYTH4	Q9UIA0	394 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	ANGPTL2	Q9UKU9	493 aa		13.48	□□□□□ -0.25
DDX11-223	ENST00000542838	SI	P14410	1827 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	TTLL13P	A6NNM8	815 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	MAGEC1	O60732	1142 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	SPAG6	O75602	509 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	SNUPN	O95149	360 aa	Known RBP	13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	OAT	P04181	439 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	CWF19L1	Q69YN2	538 aa	Known RBP	13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	ARID3B	Q8IVW6	561 aa	Predicted RBP	13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	KBTBD2	Q8IY47	623 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	PHC3	Q8NDX5	983 aa		13.47	□□□□□ -0.25
DDX11-223	ENST00000542838	FBXO27	Q8NI29	283 aa		13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms